[gmx-users] bootstrap problem

[David van der Spoel]

tomas.itsx at centrum.cz wrote:
> Hi all gromacs users,
> 
> 
> 
>  i want to compile gromacs on a debian machine, but i have received a
>  following problem, that i didnt receive on a ubuntu machine some month ago.I have
> 
> checked-out source:
> 
> 
> 
>  cvs -z3 -d :pserver:anoncvs at cvs.gromacs.org:/home/gmx/cvs co -r release-3-3-patches gmx
> 
> 
>  My autotool versions are:
> 
> 
> 
>  automake (GNU automake) 1.10
> 
>  autoconf (GNU Autoconf) 2.61
> 
> 
> 
>  Now,when i run the bootstrap the following errors apears:
> 
> 
> 
>  wintermute:/home/tomas/gmx# ./bootstrap
> 
>  /usr/share/automake-1.10/am/depend2.am: am__fastdepCCAS does not appear in AM_CONDITIONAL
>  /usr/share/automake-1.10/am/depend2.am:   The usual way to define `am__fastdepCCAS' is to add `AM_PROG_AS'
> 
>  /usr/share/automake-1.10/am/depend2.am:   to `configure.ac' and run
> 
> `aclocal' and `autoconf' again. Makefile.am:20: use `install-data-hook'
> 
> or `install-exec-hook', not `install-hook'
> 
>  wintermute:/home/tomas/gmx#
> 
> 
> 
> Finally, no makefile.in is generated.
> 
> 
> 
>  Thera are some another files generated by the bootstrap script.
> 
>  This is my top gmx directory
> 
>  before and after the bootstrap run:
> 
> 
> 
>  wintermute:/home/tomas/gmx# ls
> 
>  acinclude.m4  bootstrap     COPYING  INSTALL      README   src
> 
>  admin         config        CVS      Makefile.am  scripts
> 
>  AUTHORS       configure.ac  include  man          share
> 
> 
>  wintermute:/home/tomas/gmx# ls
> 
>  acinclude.m4  AUTHORS         config        COPYING  INSTALL      README   src
> 
>  aclocal.m4    autom4te.cache  configure     CVS      Makefile.am  scripts
> 
>  admin         bootstrap       configure.ac  include  man          share
> 
>  wintermute:/home/tomas/gmx#
> 
> 
> 
> So there are 2 new files: aclocal.m4 and autom4te.cache in the top directory
> 
>  (plus configure script).
> 
> 
> 
>  I would  appreciate any help:)
> 
> 
> 
>  Greetings,
> 
upgrade automake to at least 1.6 (but why not to 1.9 straight away).

-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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