[gmx-users] [Fwd: genion doubt]

Martin Höfling martin.hoefling at gmx.de
Tue May 29 09:49:21 CEST 2007

Am Dienstag, 29. Mai 2007 schrieb Mark Abraham:

> I had one doubt ...
> i had run the command below
>   "genion -s fws_em.tpr -o fws_ion.pdb -nname CL- -nn 2 -g fws_ion.log "
> But it is taking too much time to  do this
> showing command as
> "Replacing solvent molecule 472 (atom 1747) with CL- "
...and then it "hangs"?

This is a known issue, i had it with opensuse 10.2 (don't have the bug # 
here). The reason seems to be a compiler problem and it should be solved in 
latest svn of 3.3.

You can compile gromacs from svn in the meantime.


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