[gmx-users] Question about DNA simulation

Maik Goette mgoette at mpi-bpc.mpg.de
Tue May 29 10:52:44 CEST 2007


Because it is?

The masses are defined in the .atp file. I dont't know how GROMACS 
handles the stuff, but that is sufficiant....Maybe Eric was a bit lazy...
Why do you care for that...?

Maik Goette, Dipl. Biol.
Max Planck Institute for Biophysical Chemistry
Theoretical & computational biophysics department
Am Fassberg 11
37077 Goettingen
Germany
Tel.  : ++49 551 201 2310
Fax   : ++49 551 201 2302
Email : mgoette[at]mpi-bpc.mpg.de
         mgoette2[at]gwdg.de
WWW   : http://www.mpibpc.gwdg.de/groups/grubmueller/


bo yang wrote:
> Hello,
> I have a question regarding DNA simulation.
> I have the amber99 package.
> Can anyone give me an explanation why all the masses in the 
> ffamberXXnb.itp are 0?
> 
> Thank you very much!
> Bo
> 
> 
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