[gmx-users] dihedral .ndx format

Russell Green russellwgreen at gmail.com
Wed May 30 21:57:38 CEST 2007

Hello all,

   I'm looking into performing dihedral PCA, but first I need to make an
appropiate index file. I would like to index the phi and psi angles for a
protein. I've searched in the archives but I didn't find anything clear
enough. I know I must specify four atoms for each, but could someone kindly
show me an example format?

Russell Green
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