[gmx-users] installation error

[pragya chohan]

hi
I had installed make_hole utility earlier but when i tried to run:
make_hole.pl -f box_popc.pdb -o hole_popc.pdb -r 9.0 -lipat P8 -lipid POPC -cx 51.5 -cy 51.8
I get :
bash: make_hole.pl: command not found.
I tried reinstalling it by ./configure which completed successfully but when i ran make command i get the following error:

nonbonded.c:272: error: `esolSPC' undeclared (first use in this function)
nonbonded.c:272: error: (Each undeclared identifier is reported only once
nonbonded.c:272: error: for each function it appears in.)
nonbonded.c:276: error: `esolTIP4P' undeclared (first use in this function)
nonbonded.c:472: error: `enlistWATER' undeclared (first use in this function)
nonbonded.c:476: error: `enlistWATERWATER' undeclared (first use in this function)
nonbonded.c: In function `do_nonbonded14':
nonbonded.c:542: error: `eelRF_NEC' undeclared (first use in this function)
nonbonded.c:569: error: `epbcFULL' undeclared (first use in this function)
make[5]: *** [nonbonded.lo] Error 1
make[5]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src/gmxlib/nonbonded'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src/gmxlib/nonbonded'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src/gmxlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src'
make: *** [all-recursive] Error 1
 Please help me....
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