[gmx-users] installation error

[David van der Spoel]

pragya chohan wrote:
> ----------------------------------------> Date: Thu, 8 Nov 2007 12:35:29 +1100> From: Mark.Abraham at anu.edu.au> To: gmx-users at gromacs.org> Subject: Re: [gmx-users] installation error>> pragya chohan wrote:>> hi>> I had installed make_hole utility earlier but when i tried to run:>> make_hole.pl -f box_popc.pdb -o hole_popc.pdb -r 9.0 -lipat P8 -lipid POPC -cx 51.5 -cy 51.8>> I get :>> bash: make_hole.pl: command not found.>> So make-hole.pl, or something in its shebang line is probably not in> your path.>>> I tried reinstalling it by ./configure which completed successfully but when i ran make command i get the following error:>> This is the output from configuring GROMACS, not make_hole.pl....>> In any case, you should do "make distclean" between runs of configure> with different settings, and/or system configuration.>> Mark> _______________________________________________> gmx-users mailing list gmx-users at gromacs.org> http://www.gromacs.org/mailman/listinfo/gmx-users> Pleas
e search the archive at http://www.gromacs.org/search before posting!> Please don't post (un)subscribe requests to the list. Use the> www interface or send it to gmx-users-request at gromacs.org.> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
> Thanks for your reply.
> when i run make distclean i get following error:
> 
> make[2]: *** No rule to make target `.deps/wnblist.Plo'.  Stop.
> make[2]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src/mdlib'
> make[1]: *** [distclean-recursive] Error 1
> make[1]: Leaving directory `/home/saivikram/Desktop/gromacs/gromacs-3.3.1/src'
> make: *** [distclean-recursive] Error 1
> 
> 
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-- 
David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se