[gmx-users] trjconv does not work

OZGE ENGIN OZENGIN at KU.EDU.TR
Mon Nov 19 18:12:51 CET 2007


Of course, I am performing a 40 ns simulation, and 14 ns of it has been finished. 

What may be the problem? I know, I can extract specific frames via VMD, but it changes atom types after saving in pdb format.

-----Original Message-----
From: Ran Friedman <r.friedman at bioc.uzh.ch>
To: Discussion list for GROMACS users <gmx-users at gromacs.org>
Date: Mon, 19 Nov 2007 17:53:16 +0100
Subject: Re: [gmx-users] trjconv does not work

I see. Do you have any structure between t=0.1ps and t=0.2ps?

Ran.

OZGE ENGIN wrote:
> The command line ws the following:
>
> trjconv -s peptide_b4md.gro -f traj.xtc -b 0.1 -e 0.2 -o file_1.pdb
>
>   

_______________________________________________
gmx-users mailing list    gmx-users at gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the 
www interface or send it to gmx-users-request at gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php






More information about the gromacs.org_gmx-users mailing list