[gmx-users] protein in membrane

[Itamar Kass]

Shalom,

The easy way is to remove lipids such that a hole in the membrane will form, put your protein in in run. Or you can try the protocol in Faraldo-Gomez, J. D., Smith, G. R., and Sansom, M. S. (2002) "Setting up and optimization of membrane protein  
simulations. European Biophysics Journal" 31(3), 217-227.

You will probably need mdrun_make_hole.tar.gz which is used as a modifier of gromacs 3.1.4.

Best,
Itamar


-----Original Message-----
From: gmx-users-bounces at gromacs.org on behalf of mahbubeh zarrabi
Sent: Thu 04/10/2007 06:52
To: gmx-users at gromacs.org
Subject: [gmx-users] protein in membrane
 
Dear all
i want to insert protein in popc.which practical
protocol in gromacs is useful for me?
thanks


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