[gmx-users] angle between helices

[Anupam Nath Jha]

HI David
there are options like g_helix, g_angle and as you said g_bundle, but none of
them gives the angle between helix pairs.

anupam


> Marc F. Lensink wrote:
>> On Mon, Oct 29, 2007 at 05:31:18PM +1100, Mark Abraham wrote:
>>> Anupam Nath Jha wrote:
>>>> Dear all
>>>> can i calculate the angle between trans-membrane alpha-helices by using
>>>> gromacs?
>>> Probably. Check out section 7.4 of the manual.
>>
>> i wrote a program for that.  contact me off-list.
>>
>> as soon as i find a free moment, i'll upload it to the contrib page.
>>
> otherwise g_bundle might do it
>
>> cheers,
>> marc
>>
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>
> --
> David van der Spoel, Ph.D.
> Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
> Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
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--
Science is facts; just as houses are made of stone, so is science is made of
facts; but a pile of stones is not a house, and  a collection of facts is not
necessarily science.

Anupam Nath Jha
Ph. D. Student
Saraswathi Vishveshwara Lab
Molecular Biophysics Unit
IISc,Bangalore-560012
Karnataka
Ph. no.-22932611



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