[gmx-users] pdb file from prodrg2 cannot be recognized by gromacs?

[Yang Ye]

Hi,

You need to get the topology file from PRODRG together with the PDB file 
so you skip pdb2gmx and use the outputs from PRODRG in grompp directly. 
Of cource, do whatever you need to add water and ions before grompp.

Regards,
Yang Ye

On 9/5/2007 10:51 AM, Yafei Dai wrote:
> I got a pdb file from prodrg2 and I did pdb2gmx:
>
> pdb2gmx -f test.pdb -p test.top -o test.gro
>
> I was told "DRG" not found in residue topology. What can I do for this error information? My pdb file is as below:
>
>
>   
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