[gmx-users] Solaris x86 instalation problem
André Melro
andremelro at gmail.com
Thu Sep 13 01:07:12 CEST 2007
Hello David,
> 2007/9/12, David van der Spoel <spoel at xray.bmc.uu.se>:
> maybe you should try with gcc first. the performance will be very
> similar because of the assembly loops.
We tried that too but dont worked. diging the erros we have this call:
"bin/bash ../../../../libtool --tag=CC --mode=link cc -native -fast
-xO5 -fsimple=2 -fnonstd -dalign -L/usr/local/fftw-3.0.1/lib
-L/usr/ucblib -o libnb_kernel_ia32_sse.la nb_kernel010_ia32_sse.lo..."
that returns:
"false..." and calls this command:
"cru .libs/libnb_kernel_ia32_sse.a nb_kernel010_ia32_sse.o....."
and ends with error
"make: Fatal error: Command failed for target `libnb_kernel_ia32_sse.la"
first we thought that the problem could be the "ia32_sse" instruction
set, but if we disable it in "configure" and leave just the x86_64 for
compiling, a similiar error occurrs in other files, where libtool
returns false and the compilation stops.
So, we want to understand why this error ir occurring.
Any help with this is wellcome \o/
Thanks for helping
2007/9/12, David van der Spoel <spoel at xray.bmc.uu.se>:
> André Melro wrote:
> > Hi,
> >
> > I'm instaling gromacs in a Sun x86 machine with Solaris 10. Configure
> > seams to be ok but when compiling an error ocourrs. Could any one help
> > me?
>
> maybe you should try with gcc first. the performance will be very
> similar because of the assembly loops.
>
> >
> > Thanks
> >
> > the configure and compiling output:
> >
> > -bash-3.00$ ./configure
> > checking build system type... i386-pc-solaris2.10
> > checking host system type... i386-pc-solaris2.10
> > checking for a BSD-compatible install... config/install-sh -c
> > checking whether build environment is sane... yes
> > checking for gawk... no
> > checking for mawk... no
> > checking for nawk... nawk
> > checking whether make sets $(MAKE)... yes
> > checking how to create a ustar tar archive... plaintar
> > checking for cc... cc
> > checking for C compiler default output file name... a.out
> > checking whether the C compiler works... yes
> > checking whether we are cross compiling... no
> > checking for suffix of executables...
> > checking for suffix of object files... o
> > checking whether we are using the GNU C compiler... no
> > checking whether cc accepts -g... yes
> > checking for cc option to accept ANSI C... none needed
> > checking for style of include used by make... GNU
> > checking dependency style of cc... none
> > checking how to run the C preprocessor... cc -E
> > checking whether cc accepts -native -fast -xO5 -fsimple=2 -fnonstd
> > -dalign... yes
> > checking whether byte ordering is bigendian... no
> > checking for egrep... egrep
> > checking for ANSI C header files... yes
> > checking for sys/types.h... yes
> > checking for sys/stat.h... yes
> > checking for stdlib.h... yes
> > checking for string.h... yes
> > checking for memory.h... yes
> > checking for strings.h... yes
> > checking for inttypes.h... yes
> > checking for stdint.h... yes
> > checking for unistd.h... yes
> > checking for int... yes
> > checking size of int... 4
> > checking for long int... yes
> > checking size of long int... 4
> > checking for long long int... yes
> > checking size of long long int... 8
> > checking floating-point format... configure: WARNING: Unknown
> > floating-point format
> >
> > checking for a BSD-compatible install... config/install-sh -c
> > checking whether ln -s works... yes
> > checking whether make sets $(MAKE)... (cached) yes
> > checking for a sed that does not truncate output... /usr/bin/sed
> > checking for non-GNU ld... /usr/ucb/ld
> > checking if the linker (/usr/ucb/ld) is GNU ld... no
> > checking for /usr/ucb/ld option to reload object files... -r
> > checking for BSD-compatible nm... /usr/ccs/bin/nm -p
> > checking how to recognise dependent libraries... pass_all
> > checking dlfcn.h usability... yes
> > checking dlfcn.h presence... yes
> > checking for dlfcn.h... yes
> > checking for g++... no
> > checking for c++... no
> > checking for gpp... no
> > checking for aCC... no
> > checking for CC... CC
> > checking whether we are using the GNU C++ compiler... no
> > checking whether CC accepts -g... yes
> > checking dependency style of CC... none
> > checking how to run the C++ preprocessor... CC -E
> > checking the maximum length of command line arguments... 262144
> > checking command to parse /usr/ccs/bin/nm -p output from cc object... ok
> > checking for objdir... .libs
> > checking for ar... false
> > checking for ranlib... :
> > checking for strip... :
> > checking for cc option to produce PIC... -KPIC
> > checking if cc PIC flag -KPIC works... yes
> > checking if cc static flag -Bstatic works... no
> > checking if cc supports -c -o file.o... yes
> > checking whether the cc linker (/usr/ucb/ld) supports shared libraries... yes
> > checking dynamic linker characteristics... solaris2.10 ld.so
> > checking how to hardcode library paths into programs... immediate
> > checking whether stripping libraries is possible... no
> > checking if libtool supports shared libraries... yes
> > checking whether to build shared libraries... no
> > checking whether to build static libraries... yes
> > configure: creating libtool
> > appending configuration tag "CXX" to libtool
> > checking whether the CC linker (/usr/ucb/ld) supports shared libraries... yes
> > checking for CC option to produce PIC... -KPIC
> > checking if CC PIC flag -KPIC works... yes
> > checking if CC static flag -Bstatic works... no
> > checking if CC supports -c -o file.o... yes
> > checking whether the CC linker (/usr/ucb/ld) supports shared libraries... yes
> > checking dynamic linker characteristics... solaris2.10 ld.so
> > checking how to hardcode library paths into programs... immediate
> > appending configuration tag "F77" to libtool
> > checking for special C compiler options needed for large files... no
> > checking for _FILE_OFFSET_BITS value needed for large files... 64
> > checking for _LARGE_FILES value needed for large files... no
> > checking for _LARGEFILE_SOURCE value needed for large files... no
> > checking for fseeko... yes
> > checking for sqrt in -lm... yes
> > checking for fftw3.h... yes
> > checking for main in -lfftw3f... yes
> > checking rpc/rpc.h usability... yes
> > checking rpc/rpc.h presence... yes
> > checking for rpc/rpc.h... yes
> > checking for rpc/xdr.h... yes
> > checking for xdr_float in -lnsl... yes
> > checking for working memcmp... yes
> > checking return type of signal handlers... void
> > checking for vprintf... yes
> > checking for _doprnt... yes
> > checking if malloc debugging is wanted... no
> > checking for strcasecmp... yes
> > checking for strdup... yes
> > checking for bool... no
> > checking for X... libraries , headers
> > checking for gethostbyname... yes
> > checking for connect... no
> > checking for connect in -lsocket... yes
> > checking for remove... yes
> > checking for shmat... yes
> > checking for IceConnectionNumber in -lICE... yes
> > checking for Motif... libraries in default path, headers in default path
> > checking for libXext and libXp... yes
> > checking limits.h usability... yes
> > checking limits.h presence... yes
> > checking for limits.h... yes
> > checking for strings.h... (cached) yes
> > checking for unistd.h... (cached) yes
> > checking for unistd.h... (cached) yes
> > checking for an ANSI C-conforming const... yes
> > checking for size_t... yes
> > checking whether struct tm is in sys/time.h or time.h... time.h
> > checking for uid_t in sys/types.h... yes
> > checking for inline... inline
> > checking whether your compiler can handle assembly files (*.s)... yes
> > checking whether as fully supports ia32 SSE... yes
> > checking whether as fully supports ia32 3DNow! instructions... yes
> > checking whether byte ordering is bigendian... (cached) no
> > checking if the compiler supports gcc inline assembly... no
> > checking if the compiler supports MSVC inline assembly... no
> > configure: creating ./config.status
> > config.status: creating Makefile
> > config.status: creating src/Makefile
> > config.status: creating src/gmxlib/Makefile
> > config.status: creating src/gmxlib/gmx_blas/Makefile
> > config.status: creating src/gmxlib/gmx_lapack/Makefile
> > config.status: creating src/gmxlib/nonbonded/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
> > config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
> > config.status: creating include/Makefile
> > config.status: creating include/types/Makefile
> > config.status: creating src/mdlib/Makefile
> > config.status: creating src/kernel/Makefile
> > config.status: creating src/tools/Makefile
> > config.status: creating src/ngmx/Makefile
> > config.status: creating src/contrib/Makefile
> > config.status: creating scripts/Makefile
> > config.status: creating admin/Makefile
> > config.status: creating share/Makefile
> > config.status: creating share/tutor/Makefile
> > config.status: creating share/tutor/gmxdemo/Makefile
> > config.status: creating share/tutor/nmr1/Makefile
> > config.status: creating share/tutor/nmr2/Makefile
> > config.status: creating share/tutor/water/Makefile
> > config.status: creating share/tutor/mixed/Makefile
> > config.status: creating share/tutor/methanol/Makefile
> > config.status: creating share/tutor/speptide/Makefile
> > config.status: creating share/template/Makefile
> > config.status: creating share/top/Makefile
> > config.status: creating share/html/Makefile
> > config.status: creating share/html/images/Makefile
> > config.status: creating share/html/online/Makefile
> > config.status: creating man/Makefile
> > config.status: creating man/man1/Makefile
> > config.status: creating src/config.h
> > config.status: executing depfiles commands
> >
> > the compiling output:
> >
> > -bash-3.00$ dmake
> > dmake: defaulting to parallel mode.
> > See the man page dmake(1) for more information on setting up the .dmakerc file.
> > Making all in include
> > Making all in .
> > Making all in types
> > Making all in src
> > dmake all-recursive
> > Making all in gmxlib
> > Making all in nonbonded
> > Making all in nb_kernel_ia32_sse
> > biopol --> 1 job
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel010_ia32_sse.lo
> > nb_kernel010_ia32_sse.s
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel030_ia32_sse.lo
> > nb_kernel030_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel030_ia32_sse.lo
> > nb_kernel030_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel030_ia32_sse.s -o nb_kernel030_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel100_ia32_sse.lo
> > nb_kernel100_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel010_ia32_sse.lo
> > nb_kernel010_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel010_ia32_sse.s -o nb_kernel010_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel101_ia32_sse.lo
> > nb_kernel101_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel101_ia32_sse.lo
> > nb_kernel101_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel101_ia32_sse.s -o nb_kernel101_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel102_ia32_sse.lo
> > nb_kernel102_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel100_ia32_sse.lo
> > nb_kernel100_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel100_ia32_sse.s -o nb_kernel100_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel103_ia32_sse.lo
> > nb_kernel103_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel103_ia32_sse.lo
> > nb_kernel103_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel103_ia32_sse.s -o nb_kernel103_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel104_ia32_sse.lo
> > nb_kernel104_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel102_ia32_sse.lo
> > nb_kernel102_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel102_ia32_sse.s -o nb_kernel102_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel110_ia32_sse.lo
> > nb_kernel110_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel110_ia32_sse.lo
> > nb_kernel110_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel110_ia32_sse.s -o nb_kernel110_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel111_ia32_sse.lo
> > nb_kernel111_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel104_ia32_sse.lo
> > nb_kernel104_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel104_ia32_sse.s -o nb_kernel104_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel112_ia32_sse.lo
> > nb_kernel112_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel111_ia32_sse.lo
> > nb_kernel111_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel111_ia32_sse.s -o nb_kernel111_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel113_ia32_sse.lo
> > nb_kernel113_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel112_ia32_sse.lo
> > nb_kernel112_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel112_ia32_sse.s -o nb_kernel112_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel114_ia32_sse.lo
> > nb_kernel114_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel113_ia32_sse.lo
> > nb_kernel113_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel113_ia32_sse.s -o nb_kernel113_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel130_ia32_sse.lo
> > nb_kernel130_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel114_ia32_sse.lo
> > nb_kernel114_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel114_ia32_sse.s -o nb_kernel114_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel131_ia32_sse.lo
> > nb_kernel131_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel130_ia32_sse.lo
> > nb_kernel130_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel130_ia32_sse.s -o nb_kernel130_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel132_ia32_sse.lo
> > nb_kernel132_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel131_ia32_sse.lo
> > nb_kernel131_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel131_ia32_sse.s -o nb_kernel131_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel133_ia32_sse.lo
> > nb_kernel133_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel132_ia32_sse.lo
> > nb_kernel132_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel132_ia32_sse.s -o nb_kernel132_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel134_ia32_sse.lo
> > nb_kernel134_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel133_ia32_sse.lo
> > nb_kernel133_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel133_ia32_sse.s -o nb_kernel133_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel200_ia32_sse.lo
> > nb_kernel200_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel200_ia32_sse.lo
> > nb_kernel200_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel200_ia32_sse.s -o nb_kernel200_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel201_ia32_sse.lo
> > nb_kernel201_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel134_ia32_sse.lo
> > nb_kernel134_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel134_ia32_sse.s -o nb_kernel134_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel202_ia32_sse.lo
> > nb_kernel202_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel201_ia32_sse.lo
> > nb_kernel201_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel201_ia32_sse.s -o nb_kernel201_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel203_ia32_sse.lo
> > nb_kernel203_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel202_ia32_sse.lo
> > nb_kernel202_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel202_ia32_sse.s -o nb_kernel202_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel204_ia32_sse.lo
> > nb_kernel204_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel203_ia32_sse.lo
> > nb_kernel203_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel203_ia32_sse.s -o nb_kernel203_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel210_ia32_sse.lo
> > nb_kernel210_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel204_ia32_sse.lo
> > nb_kernel204_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel204_ia32_sse.s -o nb_kernel204_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel211_ia32_sse.lo
> > nb_kernel211_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel210_ia32_sse.lo
> > nb_kernel210_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel210_ia32_sse.s -o nb_kernel210_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel212_ia32_sse.lo
> > nb_kernel212_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel211_ia32_sse.lo
> > nb_kernel211_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel211_ia32_sse.s -o nb_kernel211_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel213_ia32_sse.lo
> > nb_kernel213_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel212_ia32_sse.lo
> > nb_kernel212_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel212_ia32_sse.s -o nb_kernel212_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel214_ia32_sse.lo
> > nb_kernel214_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel213_ia32_sse.lo
> > nb_kernel213_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel213_ia32_sse.s -o nb_kernel213_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel230_ia32_sse.lo
> > nb_kernel230_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel214_ia32_sse.lo
> > nb_kernel214_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel214_ia32_sse.s -o nb_kernel214_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel231_ia32_sse.lo
> > nb_kernel231_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel230_ia32_sse.lo
> > nb_kernel230_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel230_ia32_sse.s -o nb_kernel230_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel232_ia32_sse.lo
> > nb_kernel232_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel231_ia32_sse.lo
> > nb_kernel231_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel231_ia32_sse.s -o nb_kernel231_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel233_ia32_sse.lo
> > nb_kernel233_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel232_ia32_sse.lo
> > nb_kernel232_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel232_ia32_sse.s -o nb_kernel232_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel234_ia32_sse.lo
> > nb_kernel234_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel233_ia32_sse.lo
> > nb_kernel233_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel233_ia32_sse.s -o nb_kernel233_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel300_ia32_sse.lo
> > nb_kernel300_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel234_ia32_sse.lo
> > nb_kernel234_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel234_ia32_sse.s -o nb_kernel234_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel301_ia32_sse.lo
> > nb_kernel301_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel300_ia32_sse.lo
> > nb_kernel300_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel300_ia32_sse.s -o nb_kernel300_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel302_ia32_sse.lo
> > nb_kernel302_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel301_ia32_sse.lo
> > nb_kernel301_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel301_ia32_sse.s -o nb_kernel301_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel303_ia32_sse.lo
> > nb_kernel303_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel302_ia32_sse.lo
> > nb_kernel302_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel302_ia32_sse.s -o nb_kernel302_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel304_ia32_sse.lo
> > nb_kernel304_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel303_ia32_sse.lo
> > nb_kernel303_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel303_ia32_sse.s -o nb_kernel303_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel310_ia32_sse.lo
> > nb_kernel310_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel310_ia32_sse.lo
> > nb_kernel310_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel310_ia32_sse.s -o nb_kernel310_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel311_ia32_sse.lo
> > nb_kernel311_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel304_ia32_sse.lo
> > nb_kernel304_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel304_ia32_sse.s -o nb_kernel304_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel312_ia32_sse.lo
> > nb_kernel312_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel311_ia32_sse.lo
> > nb_kernel311_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel311_ia32_sse.s -o nb_kernel311_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel313_ia32_sse.lo
> > nb_kernel313_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel312_ia32_sse.lo
> > nb_kernel312_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel312_ia32_sse.s -o nb_kernel312_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel314_ia32_sse.lo
> > nb_kernel314_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel313_ia32_sse.lo
> > nb_kernel313_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel313_ia32_sse.s -o nb_kernel313_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel330_ia32_sse.lo
> > nb_kernel330_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel314_ia32_sse.lo
> > nb_kernel314_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel314_ia32_sse.s -o nb_kernel314_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel331_ia32_sse.lo
> > nb_kernel331_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel330_ia32_sse.lo
> > nb_kernel330_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel330_ia32_sse.s -o nb_kernel330_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel332_ia32_sse.lo
> > nb_kernel332_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel331_ia32_sse.lo
> > nb_kernel331_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel331_ia32_sse.s -o nb_kernel331_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel333_ia32_sse.lo
> > nb_kernel333_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel332_ia32_sse.lo
> > nb_kernel332_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel332_ia32_sse.s -o nb_kernel332_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel334_ia32_sse.lo
> > nb_kernel334_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel333_ia32_sse.lo
> > nb_kernel333_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel333_ia32_sse.s -o nb_kernel333_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel400_ia32_sse.lo
> > nb_kernel400_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel334_ia32_sse.lo
> > nb_kernel334_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel334_ia32_sse.s -o nb_kernel334_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel410_ia32_sse.lo
> > nb_kernel410_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel400_ia32_sse.lo
> > nb_kernel400_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel400_ia32_sse.s -o nb_kernel400_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel430_ia32_sse.lo
> > nb_kernel430_ia32_sse.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel410_ia32_sse.lo
> > nb_kernel410_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel410_ia32_sse.s -o nb_kernel410_ia32_sse.o
> > biopol --> 2 jobs
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel_ia32_sse_test_asm.lo
> > nb_kernel_ia32_sse_test_asm.s
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel430_ia32_sse.lo
> > nb_kernel430_ia32_sse.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel430_ia32_sse.s -o nb_kernel430_ia32_sse.o
> > biopol --> 2 jobs
> > source='nb_kernel_ia32_sse.c' object='nb_kernel_ia32_sse.lo' libtool=yes \
> > DEPDIR=.deps depmode=none /bin/bash ../../../../config/depcomp \
> > /bin/bash ../../../../libtool --tag=CC --mode=compile cc
> > -DHAVE_CONFIG_H -I. -I. -I../../../../src -I../../../../include
> > -DGMXLIBDIR=\"/usr/local/gromacs/share/top\"
> > -I/usr/local/fftw-3.0.1/include/ -native -fast -xO5 -fsimple=2
> > -fnonstd -dalign -c -o nb_kernel_ia32_sse.lo nb_kernel_ia32_sse.c
> > biopol --> Job output
> > /bin/bash ../../../../libtool --mode=compile cc -native -fast -xO5
> > -fsimple=2 -fnonstd -dalign -c -o nb_kernel_ia32_sse_test_asm.lo
> > nb_kernel_ia32_sse_test_asm.s
> > cc -native -fast -xO5 -fsimple=2 -fnonstd -dalign -c
> > nb_kernel_ia32_sse_test_asm.s -o nb_kernel_ia32_sse_test_asm.o
> > biopol --> Job output
> > source='nb_kernel_ia32_sse.c' object='nb_kernel_ia32_sse.lo' libtool=yes \
> > DEPDIR=.deps depmode=none /bin/bash ../../../../config/depcomp \
> > /bin/bash ../../../../libtool --tag=CC --mode=compile cc
> > -DHAVE_CONFIG_H -I. -I. -I../../../../src -I../../../../include
> > -DGMXLIBDIR=\"/usr/local/gromacs/share/top\"
> > -I/usr/local/fftw-3.0.1/include/ -native -fast -xO5 -fsimple=2
> > -fnonstd -dalign -c -o nb_kernel_ia32_sse.lo nb_kernel_ia32_sse.c
> > cc -DHAVE_CONFIG_H -I. -I. -I../../../../src -I../../../../include
> > -DGMXLIBDIR=\"/usr/local/gromacs/share/top\"
> > -I/usr/local/fftw-3.0.1/include/ -native -fast -xO5 -fsimple=2
> > -fnonstd -dalign -c nb_kernel_ia32_sse.c -o nb_kernel_ia32_sse.o
> > biopol --> 1 job
> > /bin/bash ../../../../libtool --tag=CC --mode=link cc -native -fast
> > -xO5 -fsimple=2 -fnonstd -dalign -L/usr/local/fftw-3.0.1/lib
> > -L/usr/ucblib -o libnb_kernel_ia32_sse.la nb_kernel010_ia32_sse.lo
> > nb_kernel030_ia32_sse.lo nb_kernel100_ia32_sse.lo
> > nb_kernel101_ia32_sse.lo nb_kernel102_ia32_sse.lo
> > nb_kernel103_ia32_sse.lo nb_kernel104_ia32_sse.lo
> > nb_kernel110_ia32_sse.lo nb_kernel111_ia32_sse.lo
> > nb_kernel112_ia32_sse.lo nb_kernel113_ia32_sse.lo
> > nb_kernel114_ia32_sse.lo nb_kernel130_ia32_sse.lo
> > nb_kernel131_ia32_sse.lo nb_kernel132_ia32_sse.lo
> > nb_kernel133_ia32_sse.lo nb_kernel134_ia32_sse.lo
> > nb_kernel200_ia32_sse.lo nb_kernel201_ia32_sse.lo
> > nb_kernel202_ia32_sse.lo nb_kernel203_ia32_sse.lo
> > nb_kernel204_ia32_sse.lo nb_kernel210_ia32_sse.lo
> > nb_kernel211_ia32_sse.lo nb_kernel212_ia32_sse.lo
> > nb_kernel213_ia32_sse.lo nb_kernel214_ia32_sse.lo
> > nb_kernel230_ia32_sse.lo nb_kernel231_ia32_sse.lo
> > nb_kernel232_ia32_sse.lo nb_kernel233_ia32_sse.lo
> > nb_kernel234_ia32_sse.lo nb_kernel300_ia32_sse.lo
> > nb_kernel301_ia32_sse.lo nb_kernel302_ia32_sse.lo
> > nb_kernel303_ia32_sse.lo nb_kernel304_ia32_sse.lo
> > nb_kernel310_ia32_sse.lo nb_kernel311_ia32_sse.lo
> > nb_kernel312_ia32_sse.lo nb_kernel313_ia32_sse.lo
> > nb_kernel314_ia32_sse.lo nb_kernel330_ia32_sse.lo
> > nb_kernel331_ia32_sse.lo nb_kernel332_ia32_sse.lo
> > nb_kernel333_ia32_sse.lo nb_kernel334_ia32_sse.lo
> > nb_kernel400_ia32_sse.lo nb_kernel410_ia32_sse.lo
> > nb_kernel430_ia32_sse.lo nb_kernel_ia32_sse_test_asm.lo
> > nb_kernel_ia32_sse.lo -lnsl -lfftw3f -lm -lXm -lXt -lSM -lICE
> > -lXext -lXp -lX11 -lsocket
> > biopol --> Job output
> > /bin/bash ../../../../libtool --tag=CC --mode=link cc -native -fast
> > -xO5 -fsimple=2 -fnonstd -dalign -L/usr/local/fftw-3.0.1/lib
> > -L/usr/ucblib -o libnb_kernel_ia32_sse.la nb_kernel010_ia32_sse.lo
> > nb_kernel030_ia32_sse.lo nb_kernel100_ia32_sse.lo
> > nb_kernel101_ia32_sse.lo nb_kernel102_ia32_sse.lo
> > nb_kernel103_ia32_sse.lo nb_kernel104_ia32_sse.lo
> > nb_kernel110_ia32_sse.lo nb_kernel111_ia32_sse.lo
> > nb_kernel112_ia32_sse.lo nb_kernel113_ia32_sse.lo
> > nb_kernel114_ia32_sse.lo nb_kernel130_ia32_sse.lo
> > nb_kernel131_ia32_sse.lo nb_kernel132_ia32_sse.lo
> > nb_kernel133_ia32_sse.lo nb_kernel134_ia32_sse.lo
> > nb_kernel200_ia32_sse.lo nb_kernel201_ia32_sse.lo
> > nb_kernel202_ia32_sse.lo nb_kernel203_ia32_sse.lo
> > nb_kernel204_ia32_sse.lo nb_kernel210_ia32_sse.lo
> > nb_kernel211_ia32_sse.lo nb_kernel212_ia32_sse.lo
> > nb_kernel213_ia32_sse.lo nb_kernel214_ia32_sse.lo
> > nb_kernel230_ia32_sse.lo nb_kernel231_ia32_sse.lo
> > nb_kernel232_ia32_sse.lo nb_kernel233_ia32_sse.lo
> > nb_kernel234_ia32_sse.lo nb_kernel300_ia32_sse.lo
> > nb_kernel301_ia32_sse.lo nb_kernel302_ia32_sse.lo
> > nb_kernel303_ia32_sse.lo nb_kernel304_ia32_sse.lo
> > nb_kernel310_ia32_sse.lo nb_kernel311_ia32_sse.lo
> > nb_kernel312_ia32_sse.lo nb_kernel313_ia32_sse.lo
> > nb_kernel314_ia32_sse.lo nb_kernel330_ia32_sse.lo
> > nb_kernel331_ia32_sse.lo nb_kernel332_ia32_sse.lo
> > nb_kernel333_ia32_sse.lo nb_kernel334_ia32_sse.lo
> > nb_kernel400_ia32_sse.lo nb_kernel410_ia32_sse.lo
> > nb_kernel430_ia32_sse.lo nb_kernel_ia32_sse_test_asm.lo
> > nb_kernel_ia32_sse.lo -lnsl -lfftw3f -lm -lXm -lXt -lSM -lICE
> > -lXext -lXp -lX11 -lsocket
> > mkdir .libs
> > false cru .libs/libnb_kernel_ia32_sse.a nb_kernel010_ia32_sse.o
> > nb_kernel030_ia32_sse.o nb_kernel100_ia32_sse.o
> > nb_kernel101_ia32_sse.o nb_kernel102_ia32_sse.o
> > nb_kernel103_ia32_sse.o nb_kernel104_ia32_sse.o
> > nb_kernel110_ia32_sse.o nb_kernel111_ia32_sse.o
> > nb_kernel112_ia32_sse.o nb_kernel113_ia32_sse.o
> > nb_kernel114_ia32_sse.o nb_kernel130_ia32_sse.o
> > nb_kernel131_ia32_sse.o nb_kernel132_ia32_sse.o
> > nb_kernel133_ia32_sse.o nb_kernel134_ia32_sse.o
> > nb_kernel200_ia32_sse.o nb_kernel201_ia32_sse.o
> > nb_kernel202_ia32_sse.o nb_kernel203_ia32_sse.o
> > nb_kernel204_ia32_sse.o nb_kernel210_ia32_sse.o
> > nb_kernel211_ia32_sse.o nb_kernel212_ia32_sse.o
> > nb_kernel213_ia32_sse.o nb_kernel214_ia32_sse.o
> > nb_kernel230_ia32_sse.o nb_kernel231_ia32_sse.o
> > nb_kernel232_ia32_sse.o nb_kernel233_ia32_sse.o
> > nb_kernel234_ia32_sse.o nb_kernel300_ia32_sse.o
> > nb_kernel301_ia32_sse.o nb_kernel302_ia32_sse.o
> > nb_kernel303_ia32_sse.o nb_kernel304_ia32_sse.o
> > nb_kernel310_ia32_sse.o nb_kernel311_ia32_sse.o
> > nb_kernel312_ia32_sse.o nb_kernel313_ia32_sse.o
> > nb_kernel314_ia32_sse.o nb_kernel330_ia32_sse.o
> > nb_kernel331_ia32_sse.o nb_kernel332_ia32_sse.o
> > nb_kernel333_ia32_sse.o nb_kernel334_ia32_sse.o
> > nb_kernel400_ia32_sse.o nb_kernel410_ia32_sse.o
> > nb_kernel430_ia32_sse.o nb_kernel_ia32_sse_test_asm.o
> > nb_kernel_ia32_sse.o
> > *** Error code 1
> > dmake: Fatal error: Command failed for target `libnb_kernel_ia32_sse.la'
> > Current working directory
> > /home/andre/gromacs-3.3.1/src/gmxlib/nonbonded/nb_kernel_ia32_sse
> > *** Error code 1
> > The following command caused the error:
> > failcom='exit 1'; \
> > for f in x $MAKEFLAGS; do \
> > case $f in \
> > *=* | --[!k]*);; \
> > *k*) failcom='fail=yes';; \
> > esac; \
> > done; \
> > dot_seen=no; \
> > target=`echo all-recursive | sed s/-recursive//`; \
> > list='nb_kernel_ia32_sse nb_kernel_ia32_3dnow
> > nb_kernel'; for subdir in $list; do \
> > echo "Making $target in $subdir"; \
> > if test "$subdir" = "."; then \
> > dot_seen=yes; \
> > local_target="$target-am"; \
> > else \
> > local_target="$target"; \
> > fi; \
> > (cd $subdir && dmake $local_target) \
> > || eval $failcom; \
> > done; \
> > if test "$dot_seen" = "no"; then \
> > dmake "$target-am" || exit 1; \
> > fi; test -z "$fail"
> > dmake: Fatal error: Command failed for target `all-recursive'
> > Current working directory /home/andre/gromacs-3.3.1/src/gmxlib/nonbonded
> > *** Error code 1
> > The following command caused the error:
> > failcom='exit 1'; \
> > for f in x $MAKEFLAGS; do \
> > case $f in \
> > *=* | --[!k]*);; \
> > *k*) failcom='fail=yes';; \
> > esac; \
> > done; \
> > dot_seen=no; \
> > target=`echo all-recursive | sed s/-recursive//`; \
> > list='nonbonded gmx_blas gmx_lapack'; for subdir in $list; do \
> > echo "Making $target in $subdir"; \
> > if test "$subdir" = "."; then \
> > dot_seen=yes; \
> > local_target="$target-am"; \
> > else \
> > local_target="$target"; \
> > fi; \
> > (cd $subdir && dmake $local_target) \
> > || eval $failcom; \
> > done; \
> > if test "$dot_seen" = "no"; then \
> > dmake "$target-am" || exit 1; \
> > fi; test -z "$fail"
> > dmake: Fatal error: Command failed for target `all-recursive'
> > Current working directory /home/andre/gromacs-3.3.1/src/gmxlib
> > *** Error code 1
> > The following command caused the error:
> > failcom='exit 1'; \
> > for f in x $MAKEFLAGS; do \
> > case $f in \
> > *=* | --[!k]*);; \
> > *k*) failcom='fail=yes';; \
> > esac; \
> > done; \
> > dot_seen=no; \
> > target=`echo all-recursive | sed s/-recursive//`; \
> > list='gmxlib mdlib kernel tools ngmx contrib'; for subdir in $list; do \
> > echo "Making $target in $subdir"; \
> > if test "$subdir" = "."; then \
> > dot_seen=yes; \
> > local_target="$target-am"; \
> > else \
> > local_target="$target"; \
> > fi; \
> > (cd $subdir && dmake $local_target) \
> > || eval $failcom; \
> > done; \
> > if test "$dot_seen" = "no"; then \
> > dmake "$target-am" || exit 1; \
> > fi; test -z "$fail"
> > dmake: Fatal error: Command failed for target `all-recursive'
> > Current working directory /home/andre/gromacs-3.3.1/src
> > *** Error code 1
> > dmake: Fatal error: Command failed for target `all'
> > Current working directory /home/andre/gromacs-3.3.1/src
> > *** Error code 1
> > The following command caused the error:
> > failcom='exit 1'; \
> > for f in x $MAKEFLAGS; do \
> > case $f in \
> > *=* | --[!k]*);; \
> > *k*) failcom='fail=yes';; \
> > esac; \
> > done; \
> > dot_seen=no; \
> > target=`echo all-recursive | sed s/-recursive//`; \
> > list='include src admin scripts share man'; for subdir in $list; do \
> > echo "Making $target in $subdir"; \
> > if test "$subdir" = "."; then \
> > dot_seen=yes; \
> > local_target="$target-am"; \
> > else \
> > local_target="$target"; \
> > fi; \
> > (cd $subdir && dmake $local_target) \
> > || eval $failcom; \
> > done; \
> > if test "$dot_seen" = "no"; then \
> > dmake "$target-am" || exit 1; \
> > fi; test -z "$fail"
> > dmake: Fatal error: Command failed for target `all-recursive'
> > -bash-3.00$
> > _______________________________________________
> > gmx-users mailing list gmx-users at gromacs.org
> > http://www.gromacs.org/mailman/listinfo/gmx-users
> > Please search the archive at http://www.gromacs.org/search before posting!
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> > www interface or send it to gmx-users-request at gromacs.org.
> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
>
> --
> David van der Spoel, Ph.D.
> Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
> Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.
> spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
> _______________________________________________
> gmx-users mailing list gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
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>
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