[gmx-users] Conformation search!
Mark.Abraham at anu.edu.au
Fri Apr 18 16:37:32 CEST 2008
Anthony Cruz wrote:
> > You seem to want to let your domains move relative to each other, but
> > also to deny them much internal freedom. So what you want to do is
> > enforce (some of) their internal structure. Thus, use distance
> > Mark
> Thank you for your answer. But probably I don't make my point clear. I
> have a protein with two units (domains). I think that distant restraint
> will restraint the distance between the two domains or units... This is
> done by the linkers between them. I want them to move freely but not to
> change its structure, like freezing the backbone and let the rest to
> move freely.
> How I could do this?
Distance restraints to "enforce their *internal structure*"... So don't
restrain all the distances, just some cunningly chosen ones inside each
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