[gmx-users] Conformation search!

[Anthony Cruz]

On Friday 18 April 2008 10:37 am, Mark Abraham wrote:
> Anthony Cruz wrote:
> >  > You seem to want to let your domains move relative to each other, but
> >  >
> >  > also to deny them much internal freedom. So what you want to do is
> >  >
> >  > enforce (some of) their internal structure. Thus, use distance
> >
> > restraints.
> >
> >  > Mark
> >
> > Thank you for your answer. But probably I don't make my point clear. I
> > have a protein with two units (domains). I think that distant restraint
> > will restraint the distance between the two domains or units... This is
> > done by the linkers between them. I want them to move freely but not to
> > change its structure, like freezing the backbone and let the rest to
> > move freely.
> >
> > How I could do this?
>
> Distance restraints to "enforce their *internal structure*"... So don't
> restrain all the distances, just some cunningly chosen ones inside each
> domain.
>
> Mark

Now its clear!
Thank you very much!!!

Anthony

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