[gmx-users] free energy calculation
shuai lu
luai.cpu at gmail.com
Tue Apr 22 07:41:08 CEST 2008
Hi everyone,
I want to calculate free energy between protein and ligand by "g_lie"
command. So the average Coulomb interaction and average Lennard-Jones
interaction of ligand-solvent are need. But I do not know if average Coulomb
interaction is the result of "Coul-SR" plus "Coul-14", which are calculated
by "g_energy" command, and also if Lennard-Jones interaction is the result
of "LJ-SR" plus "LJ-LR" plus "LJ-14". Hence I hope anyone who know about
them may help me kindly.
Thank you!
--
Lu Shuai
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20080422/78d829f0/attachment.html>
More information about the gromacs.org_gmx-users
mailing list