[gmx-users] trjconv error

[Ragothaman Yennamalli]

Hi,
Sorry for not replying immediately.

Gromacs ver 3.2.1
OS is Red hat enterprise 4
Initially I had tried reading the file from an external hard disk and now I copied it to another system and tried again. Still the same error.
The reason why I was truncating was due to a magic number error I got while reading the trajectory.
"Fatal error: Magic Number Error in XTC file (read 0, should be 1995)"
So, I was truncating it at an earlier time from where I didnt see any errors.

Regards,
Raghu 
 


--- On Fri, 18/4/08, Mark Abraham <Mark.Abraham at anu.edu.au> wrote:

> From: Mark Abraham <Mark.Abraham at anu.edu.au>
> Subject: Re: [gmx-users] trjconv error
> To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> Date: Friday, 18 April, 2008, 8:09 PM
> Ragothaman Yennamalli wrote:
> > I wanted to truncate a trajectory file and when I use
> > trjconv tool, I get an error:
> > Fatal error:
> > /media/usbdisk1/paul_case4/full_10ns_040408/traj2.xtc
> > is not a trj file, exiting
> > 
> > The file is able to read by gmxcheck...
> > 
> > What could be the problem?
> 
> What GROMACS version? What OS? Have you tried copying the
> file elsewhere 
> and reading from there?
> 
> Mark
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