[gmx-users] trjconv error

Ragothaman Yennamalli ymr79in at yahoo.co.in
Wed Apr 23 07:37:04 CEST 2008

Sorry for not replying immediately.

Gromacs ver 3.2.1
OS is Red hat enterprise 4
Initially I had tried reading the file from an external hard disk and now I copied it to another system and tried again. Still the same error.
The reason why I was truncating was due to a magic number error I got while reading the trajectory.
"Fatal error: Magic Number Error in XTC file (read 0, should be 1995)"
So, I was truncating it at an earlier time from where I didnt see any errors.


--- On Fri, 18/4/08, Mark Abraham <Mark.Abraham at anu.edu.au> wrote:

> From: Mark Abraham <Mark.Abraham at anu.edu.au>
> Subject: Re: [gmx-users] trjconv error
> To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> Date: Friday, 18 April, 2008, 8:09 PM
> Ragothaman Yennamalli wrote:
> > I wanted to truncate a trajectory file and when I use
> > trjconv tool, I get an error:
> > Fatal error:
> > /media/usbdisk1/paul_case4/full_10ns_040408/traj2.xtc
> > is not a trj file, exiting
> > 
> > The file is able to read by gmxcheck...
> > 
> > What could be the problem?
> What GROMACS version? What OS? Have you tried copying the
> file elsewhere 
> and reading from there?
> Mark
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search
> before posting!
> Please don't post (un)subscribe requests to the list.
> Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read
> http://www.gromacs.org/mailing_lists/users.php

      Unlimited freedom, unlimited storage. Get it now, on http://help.yahoo.com/l/in/yahoo/mail/yahoomail/tools/tools-08.html/

More information about the gromacs.org_gmx-users mailing list