[gmx-users] help regarding analysis

pragya chohan pragyachohan at hotmail.com
Tue Apr 29 07:13:56 CEST 2008

Dear users
I have run a protein XX in water. According to literature, it is supposed to undergo tertiary structure changes without much secondary structure changes.
Can anyone help me with what can be a suitable analysis method for it.
The other changes reported include 1. change in hydrophobicity - which I have done 
2. some change from helix to coil which I have done through do_dssp
Any other suggestion is appreciated
Thanking You
Pragya Chohan
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