[gmx-users] g_rmsd

[Tsjerk Wassenaar]

Hi sh-karbalaee,

g_rmsf by default uses deviations from the average structure. You can
write out that structure and use it as reference for g_rms.

Cheers,

Tsjerk

On Thu, Dec 4, 2008 at 6:52 AM, shahrbanoo karbalaee
<shahrbanoo at gmail.com> wrote:
> Dear justin
> I want to calculate rmsd  or rmsf from avg structure.Infact I
> calculate standard deviation from average structure.Can I do it with
> command g_rmsf and g_rmsd?thanks for your advise.
>
> best
> sh-karbalaee
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>



-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623