[gmx-users] Editing the log in files [HN]

[Hideya Nakamura]

Thank you Justin for your prompt response.

I installed Gromacs in the home directory of Cygwin.
Actually, I can't fine the bin subdirectory in the gromacs directory.
(I also can't find GMXRC anywhere.)
Does this mean Gromacs cannot be installed correctly?
Do I have to install gromacs again?

Hideya


2008/12/16 Justin A. Lemkul <jalemkul at vt.edu>

>
>
> Hideya Nakamura wrote:
>
>> Hello Mark and Justin,
>>
>> Thank you very much for your responce.
>> I edited the .bashrc file which is in my home directory.
>> I opened .bashrc file using vi and added "source
>> /usr/local/gromacs/bin/GMXRC" at the last line.
>> And then, I started Cygwin again. However, an error mesage (bash:
>> /usr/local/gromacs/bin/GMXRC: No such file or directory) is showed when I
>> start Cygwin. In addition, when I enter the command "luck" for gromacs, I
>> can't see the correct responce (i.e. "Whatever Happened to Pong ?" (F.
>> Black))
>> Could you please tell me your suggestion?
>> I am using Cygwin on Windows Vista Enterprise.
>>
>
> Where did you install Gromacs?  The GMXRC script should be in the bin
> subdirectory of whatever prefix you specified during configuration.  If your
> environment is finding luck, then try "which luck" to locate the PATH to
> Gromacs.
>
> -Justin
>
>
>> Hideya
>>
>>
>> 2008/12/15 Mark Abraham <Mark.Abraham at anu.edu.au <mailto:
>> Mark.Abraham at anu.edu.au>>
>>
>>    Hideya Nakamura wrote:
>>
>>        Hello,
>>
>>        I try to install GROMACS using Cygwin on my Windows PC.
>>
>>        I have already installed fftw, and then I will install GROMACS
>>        based on a instruction on wiki.gromacs.org
>>        <http://wiki.gromacs.org> <http://wiki.gromacs.org/>
>>        (http://wiki.gromacs.org/index.php/Cygwin_HOWTO).
>>
>>
>>        In this instruction, there is a description "#6 Edit your login
>>        files to source /usr/local/gromacs/bin/GMXRC
>>
>>        (or manually add /usr/local/gromacs/man to the MANPATH and check
>>        that /usr/local/bin is in the PATH)."
>>
>>        However, I can't edit my log in files. Could someone give me how
>>        to edit my log in files by using Cygwin?
>>
>>
>>    Probably you're using bash shell, so in your home directory, edit
>>    the file .bashrc and add the line "source
>>    /usr/local/gromacs/bin/GMXRC" (or as appropriate for wherever you
>>    installed GROMACS), and then open a new shell. This way the GROMACS
>>    environment will always be configured right for you.
>>
>>    Mark
>>    _______________________________________________
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>>
>>
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>
> --
> ========================================
>
> Justin A. Lemkul
> Graduate Research Assistant
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
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