[gmx-users] analysis of POPC
pragyachohan at hotmail.com
Sat Feb 2 13:54:35 CET 2008
Thanks, but I did get some papers on the analysis done on POPC by MD but I did not get any experimental papers showing the values so that I can compare results of my MD with experimental data.
If anyone happens to have such papers please send them to me at pragyachohan at hotmail.com.> Date: Sat, 2 Feb 2008 07:20:54 -0500> From: jalemkul at vt.edu> To: gmx-users at gromacs.org> Subject: Re: [gmx-users] analysis of POPC> > Quoting pragya chohan <pragyachohan at hotmail.com>:> > >> > hello users> > I am trying to do analysis after bilayer simulation. I cannot get any> > experimental data on POPC to validate my model with. Can the people who are> > working on same lipid tell me some references and also what analysis should> > be done of the bilayer before putting protein into it?> > I spent less than two minutes on Google and found papers giving all sorts of> experimental parameters (density, area per headgroup, bilayer thickness, etc). > I suggest you try the same.> > In terms of the analysis you need to do, that is up to what question you are> asking and why you are simulating this particular lipid. Refer to the> literature and find papers by groups that have simulated proteins in POPC (and> perhaps proteins in membranes in general) to determine what they have found> relevant, and apply the same to your system.> > -Justin> > > _________________________________________________________________> > Tried the new MSN Messenger? It’s cool! Download now.> > http://messenger.msn.com/Download/Default.aspx?mkt=en-in> > > > ========================================> > Justin A. Lemkul> Graduate Research Assistant> Department of Biochemistry> Virginia Tech> Blacksburg, VA> jalemkul at vt.edu | (540) 231-9080> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/> > ========================================> _______________________________________________> gmx-users mailing list gmx-users at gromacs.org> http://www.gromacs.org/mailman/listinfo/gmx-users> Please search the archive at http://www.gromacs.org/search before posting!> Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-request at gromacs.org.> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
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