[gmx-users] Re: installation problem for MAC OS

[Warner Yuen]

Hi Gromacs Users

I've looked at trying to build Gromacs 3.3.2 with the pretty much the  
same configuration and suggestions as below, but I am still running  
into the ld error:

ld: in ../gmxlib/.libs/libgmx.a(nb_kernel300_ia32_3dnow.o), in section  
__TEXT,__text reloc 1: bad pc-rel vanilla relocation length

Any other suggestions?

Warner Yuen
Scientific Computing
Consulting Engineer
Apple Computer
email: wyuen at apple.com
Tel: 408.718.2859
Fax: 408.715.0133



On Jan 24, 2008, at 3:00 AM, gmx-users-request at gromacs.org wrote:

> ------------------------------
>
> Message: 7
> Date: Thu, 24 Jan 2008 11:14:56 +0100 (CET)
> From: Yunan Yan <yayan at chemie.fu-berlin.de>
> Subject: [gmx-users] Re: installation problem for MAC OS
> To: gmx-users at gromacs.org
> Message-ID:
> 	<Pine.LNX.4.44.0801241110280.20884-100000 at mail.chemie.fu-berlin.de>
> Content-Type: TEXT/PLAIN; charset=US-ASCII
>
>
> Thank you so much. It works.
>
> Best,
> Yun-an
>
>
>>
>> Hello!
>>
>> A quick fix so that you will be able to compile, is to try to run the
>> configure script with the flag --disable-ia32-sse.
>> Hopefully you should get a working installation, but with no sse-
>> support (which might be what you want :-)
>>
>> Cheers
>> /Per
>>
>>
>> 23 jan 2008 kl. 14.24 skrev Yunan Yan:
>>
>>>
>>> Dear all,
>>>
>>> I have difficulties when I try to
>>> install Gromacs 3.3.2 in my MAC OS.
>>> Please see the following for details.
>>>
>>> configuration:
>>>
>>> $ ./configure CC=icc CXX=icc F77=ifort
>>> --prefix=/Users/yunan/usr/local/Gromacs  --with-qmmm-cpmd --with-
>>> fft=fftw3
>>> CLAGS=-no-multibyte-chars CPP=/usr/bin/cpp
>>>
>>> System information:
>>>
>>> uname -m = i386
>>> uname -r = 9.1.0
>>> uname -s = Darwin
>>> uname -v = Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT  
>>> 2007;
>>> root:xnu-1228.0.2~1/RELEASE_I386
>>> /usr/bin/hostinfo      = Mach kernel version:
>>>    Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;
>>> root:xnu-1228.0.2~1/RELEASE_I386
>>> Kernel configured for up to 8 processors.
>>> 8 processors are physically available.
>>> 8 processors are logically available.
>>> Processor type: i486 (Intel 80486)
>>> configure:3291: icc -V
>>> Intel(R) C Compiler for applications running on IA-32, Version 10.1
>>> Build 20070913 Package ID: m_cc_p_10.1.006
>>> Copyright (C) 1985-2007 Intel Corporation.  All rights reserved.
>>>
>>> Error:
>>> icc -funroll-all-loops -I/Users/yunan/usr/local/lib -framework
>>> Accelerate
>>> -o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o
>>> sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o
>>> toputil.o
>>> topdirs.o grompp.o compute_io.o  ../mdlib/.libs/libmd.a -L/usr/X11/ 
>>> lib
>>> ../gmxlib/.libs/libgmx.a -lfftw3f /usr/X11/lib/libSM.6.0.0.dylib
>>> /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib
>>> /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib
>>> ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in section
>>> __TEXT,__text reloc 1: bad pc-rel vanilla relocation length
>>>
>>> The same will happen when I use gcc compiler.
>>> Does someone have some ideas about what's going on
>>> here and how to figure it out?
>>>
>>> Thanks a lot.
>>>
>>> Best regards,
>>> Yun-an
>>>
>

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