[gmx-users] Re: installation problem for MAC OS

[Warner Yuen]

My apologies. I should have known better, but was too lazy to type all  
the configurations I tried. Its kind of like hitting the "I'm feeling  
lucky" button on Google. Anyway here's what I tried and always getting  
the following error:

ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in section  
__TEXT,__text reloc 1: bad pc-rel vanilla relocation length collect2:  
ld returned 1 exit status

make[3]: *** [grompp] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all] Error 2
make: *** [all-recursive] Error 1

Compilers used:
gcc version 4.0.1 (Apple Inc. build 5465)
icc version 10.1.007
icc version 10.1.009

Gromacs:
version 3.3.1
version 3.3.2
./configure --prefix=/gromacs/gromacs_test
./configure --prefix=/gromacs/gromacs_test --disable-ia32-sse
./configure --prefix=/gromacs/gromacs_test --with-qmmm-cpmd --disable- 
ia32-sse

FFTW-3.1.1
using gcc
./configure --enable-float



Warner Yuen
Scientific Computing
Consulting Engineer
Apple Computer
email: wyuen at apple.com
Tel: 408.718.2859
Fax: 408.715.0133



On Feb 7, 2008, at 1:21 AM, gmx-users-request at gromacs.org wrote:

> Message: 1
> Date: Thu, 07 Feb 2008 08:20:44 +1100
> From: Mark Abraham <Mark.Abraham at anu.edu.au>
> Subject: Re: [gmx-users] Re: installation problem for MAC OS
> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
> Message-ID: <47AA24AC.7030106 at anu.edu.au>
> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>
> Warner Yuen wrote:
>> Hi Gromacs Users
>>
>> I've looked at trying to build Gromacs 3.3.2 with the pretty much the
>> same configuration and suggestions as below, but I am still running  
>> into
>> the ld error:
>>
>> ld: in ../gmxlib/.libs/libgmx.a(nb_kernel300_ia32_3dnow.o), in  
>> section
>> __TEXT,__text reloc 1: bad pc-rel vanilla relocation length
>>
>> Any other suggestions?
>
> Computers are exacting, and so do you need to be when using them, and
> reporting problems. "pretty much" the same as another user  
> configuring a
> 3rd-party modification of GROMACS could mean anything, even if the
> people you're trying to get free help from can be bothered making  
> sense
> of that thread you quoted. They'll be much more interested in what
> configure command(s) you are actually using, on what hardware and on
> what OS with what results. :-)
>
> Mark

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