[gmx-users] Re: installation problem for MAC OS

[Erik Lindahl]

Hi Warner,

I think this is a bug in the assembler/linker shipped with Leopard  
since the instructions are perfectly valid.
In any case, I've worked around it in the release branch of CVS.

Cheers,

Erik

On Feb 7, 2008, at 8:52 PM, Warner Yuen wrote:

> My apologies. I should have known better, but was too lazy to type  
> all the configurations I tried. Its kind of like hitting the "I'm  
> feeling lucky" button on Google. Anyway here's what I tried and  
> always getting the following error:
>
> ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in section  
> __TEXT,__text reloc 1: bad pc-rel vanilla relocation length  
> collect2: ld returned 1 exit status
>
> make[3]: *** [grompp] Error 1
> make[2]: *** [all-recursive] Error 1
> make[1]: *** [all] Error 2
> make: *** [all-recursive] Error 1
>
> Compilers used:
> gcc version 4.0.1 (Apple Inc. build 5465)
> icc version 10.1.007
> icc version 10.1.009
>
> Gromacs:
> version 3.3.1
> version 3.3.2
> ./configure --prefix=/gromacs/gromacs_test
> ./configure --prefix=/gromacs/gromacs_test --disable-ia32-sse
> ./configure --prefix=/gromacs/gromacs_test --with-qmmm-cpmd -- 
> disable-ia32-sse
>
> FFTW-3.1.1
> using gcc
> ./configure --enable-float
>
>
>
> Warner Yuen
> Scientific Computing
> Consulting Engineer
> Apple Computer
> email: wyuen at apple.com
> Tel: 408.718.2859
> Fax: 408.715.0133
>
>
>
> On Feb 7, 2008, at 1:21 AM, gmx-users-request at gromacs.org wrote:
>
>> Message: 1
>> Date: Thu, 07 Feb 2008 08:20:44 +1100
>> From: Mark Abraham <Mark.Abraham at anu.edu.au>
>> Subject: Re: [gmx-users] Re: installation problem for MAC OS
>> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>> Message-ID: <47AA24AC.7030106 at anu.edu.au>
>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>>
>> Warner Yuen wrote:
>>> Hi Gromacs Users
>>>
>>> I've looked at trying to build Gromacs 3.3.2 with the pretty much  
>>> the
>>> same configuration and suggestions as below, but I am still  
>>> running into
>>> the ld error:
>>>
>>> ld: in ../gmxlib/.libs/libgmx.a(nb_kernel300_ia32_3dnow.o), in  
>>> section
>>> __TEXT,__text reloc 1: bad pc-rel vanilla relocation length
>>>
>>> Any other suggestions?
>>
>> Computers are exacting, and so do you need to be when using them, and
>> reporting problems. "pretty much" the same as another user  
>> configuring a
>> 3rd-party modification of GROMACS could mean anything, even if the
>> people you're trying to get free help from can be bothered making  
>> sense
>> of that thread you quoted. They'll be much more interested in what
>> configure command(s) you are actually using, on what hardware and on
>> what OS with what results. :-)
>>
>> Mark
>
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before  
> posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20080208/129f5976/attachment.html>