[gmx-users] Re: installation problem for MAC OS

[Yiannis]

Hello,
I just encounter the same "bad pc-rel vanilla relocation length  
collect2" error on an Intel Mac running the Server version of Leopard  
and taking the CVS release as proposed by Erik fixed also the problem.
Many thanks!
Ioannis


Le 8 févr. 08 à 11:17, Erik Lindahl a écrit :

> Hi Warner,
>
> I think this is a bug in the assembler/linker shipped with Leopard  
> since the instructions are perfectly valid.
> In any case, I've worked around it in the release branch of CVS.
>
> Cheers,
>
> Erik
>
> On Feb 7, 2008, at 8:52 PM, Warner Yuen wrote:
>
>> My apologies. I should have known better, but was too lazy to type  
>> all the configurations I tried. Its kind of like hitting the "I'm  
>> feeling lucky" button on Google. Anyway here's what I tried and  
>> always getting the following error:
>>
>> ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in  
>> section __TEXT,__text reloc 1: bad pc-rel vanilla relocation length  
>> collect2: ld returned 1 exit status
>>
>> make[3]: *** [grompp] Error 1
>> make[2]: *** [all-recursive] Error 1
>> make[1]: *** [all] Error 2
>> make: *** [all-recursive] Error 1
>>
>> Compilers used:
>> gcc version 4.0.1 (Apple Inc. build 5465)
>> icc version 10.1.007
>> icc version 10.1.009
>>
>> Gromacs:
>> version 3.3.1
>> version 3.3.2
>> ./configure --prefix=/gromacs/gromacs_test
>> ./configure --prefix=/gromacs/gromacs_test --disable-ia32-sse
>> ./configure --prefix=/gromacs/gromacs_test --with-qmmm-cpmd -- 
>> disable-ia32-sse
>>
>> FFTW-3.1.1
>> using gcc
>> ./configure --enable-float
>>
>>
>>
>> Warner Yuen
>> Scientific Computing
>> Consulting Engineer
>> Apple Computer
>> email: wyuen at apple.com
>> Tel: 408.718.2859
>> Fax: 408.715.0133
>>
>>
>>
>> On Feb 7, 2008, at 1:21 AM, gmx-users-request at gromacs.org wrote:
>>
>>> Message: 1
>>> Date: Thu, 07 Feb 2008 08:20:44 +1100
>>> From: Mark Abraham <Mark.Abraham at anu.edu.au>
>>> Subject: Re: [gmx-users] Re: installation problem for MAC OS
>>> To: Discussion list for GROMACS users <gmx-users at gromacs.org>
>>> Message-ID: <47AA24AC.7030106 at anu.edu.au>
>>> Content-Type: text/plain; charset=ISO-8859-1; format=flowed
>>>
>>> Warner Yuen wrote:
>>>> Hi Gromacs Users
>>>>
>>>> I've looked at trying to build Gromacs 3.3.2 with the pretty much  
>>>> the
>>>> same configuration and suggestions as below, but I am still  
>>>> running into
>>>> the ld error:
>>>>
>>>> ld: in ../gmxlib/.libs/libgmx.a(nb_kernel300_ia32_3dnow.o), in  
>>>> section
>>>> __TEXT,__text reloc 1: bad pc-rel vanilla relocation length
>>>>
>>>> Any other suggestions?
>>>
>>> Computers are exacting, and so do you need to be when using them,  
>>> and
>>> reporting problems. "pretty much" the same as another user  
>>> configuring a
>>> 3rd-party modification of GROMACS could mean anything, even if the
>>> people you're trying to get free help from can be bothered making  
>>> sense
>>> of that thread you quoted. They'll be much more interested in what
>>> configure command(s) you are actually using, on what hardware and on
>>> what OS with what results. :-)
>>>
>>> Mark
>>
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