[gmx-users] Selection of multiple residues

Berk Hess gmx3 at hotmail.com
Fri Feb 22 12:13:26 CET 2008

You don't specity what you want exactly.

make_ndx can select residue on number and name, can select multiple residues
with one command and can select residue sequences.
make_ndx can also select chains, if the input is a pdb or tpr file.


> Hello,
> I want to select 300 residues out of my 1000 residue protein and make an index out of it. make_ndx does not seem to have a simple method to do this. These are all residues in the same chain. How does one do this ?
> Sincerely
> -Maria
> --
> Maria G.
> Technical University of Denmark
> Copenhagen

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