[gmx-users] Concerning DSSP

David van der Spoel spoel at xray.bmc.uu.se
Tue Feb 26 16:00:10 CET 2008

Ricardo Soares wrote:
> Hello everyone. I'm new to this list and first of all I'd like to salute 
> all the members and crew.
> I'm having a little problem with permissions with the DSSP program, 
> should anybody help me I'd be glad. I've already read the forum but 
> couldn't find an answer.
> I'm running GROMACS in two computers (same OS - linux debian); I 
> installed the DSSP program in both following the same procedure, thus 
> equally. However only one of them works properly, the other keeps 
> writing the following output:
> "Back Off! I just backed up ddYgb3p0 to ./#ddYgb3p0.1#"
> "sh: /path/to/dssp: Permission denied"
> These folders' permissions are already changed by the chmod command. 
> What else could it be?
> I'd really appreciate some insights.
try running dssp without gromacs.

> Ricardo.
> ___________________________________________________________
> Ricardo Oliveira dos Santos Soares
> Post-graduation Student in Biological Physics
> University of Sao Paulo - USP
> Faculty of Farmaceutical Sciences of Ribeirao Preto - FCFRP
> Phone: 55 (16) 3602-4840
> Curriculum Lattes - http://lattes.cnpq.br/0777038258459931
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David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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