[gmx-users] Problems with GROMPP

Mark Abraham Mark.Abraham at anu.edu.au
Sat Jan 12 03:28:19 CET 2008

> It seems, that my protein is truncated in the xxx.gro file. The number of water molecules is ok, but there are about 150 AS residues missing after I run GENBOX ??? The xxx.top has them included, so this explains the different numbers.

Well, read the warning messages from pdb2gmx, genbox and grompp carefully.


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