January 2008 Archives by thread

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Starting: Tue Jan 1 04:34:39 CET 2008
Ending: Thu Jan 31 23:45:42 CET 2008
Messages: 676

• [gmx-users] problem in pr.mdp file   Mark Abraham
• [gmx-users] problem installing gromacs   Mark Abraham
• [gmx-users] problem in bilayer simulation   Mark Abraham
  • [gmx-users] problem in bilayer simulation   pragya chohan
    • [gmx-users] problem in bilayer simulation   Mark Abraham
• [gmx-users] what is position restrain?   Mark Abraham
• [gmx-users] RMSD calculations by g_rms   Tsjerk Wassenaar
• [gmx-users] problem of pr.mdp file   sudheer
  • [gmx-users] problem of pr.mdp file   David van der Spoel
    • [gmx-users] problem of pr.mdp file   Yin Jian
  • [gmx-users] problem of pr.mdp file   Mark Abraham
• [gmx-users] LINCS   Stephen M. Dutz
  • [gmx-users] LINCS   Mark Abraham
• [gmx-users] Vacancies   andrea correa
• [gmx-users] Re: problem in bilayer simulation   Markus Miettinen
• [gmx-users] LINCS   Stephen M. Dutz
• [gmx-users] output coordinate file of ionic system   renying
  • [gmx-users] output coordinate file of ionic system   Xavier Periole
  • [gmx-users] output coordinate file of ionic system   Jochen Hub
• [gmx-users] g_rmsf fitting   tangxuan
  • [gmx-users] g_rmsf fitting   Tsjerk Wassenaar
    • [gmx-users] g_rmsf fitting   tangxuan
      • [gmx-users] g_rmsf fitting   David van der Spoel
      • [gmx-users] g_rmsf fitting   Tsjerk Wassenaar
      • [gmx-users] g_rmsf fitting   tangxuan
      • [gmx-users] g_rmsf fitting   Tsjerk Wassenaar
• [gmx-users] generation of guanidium intramolecular force-field   kinshuk at chem.iitb.ac.in
  • [gmx-users] generation of guanidium intramolecular force-field   Justin A. Lemkul
    • [gmx-users] generation of guanidium intramolecular force-field   kinshuk at chem.iitb.ac.in
      • [gmx-users] generation of guanidium intramolecular force-field   David van der Spoel
      • [gmx-users] generation of guanidium intramolecular force-field   Mark Abraham
• [gmx-users] Ambconv running   Bruce Ray
• [gmx-users] g_wham help.   DAVID RINCON
• [gmx-users] grompp warnings/errors I haven't seen before   David Mobley
  • [gmx-users] Re: grompp warnings/errors I haven't seen before   David Mobley
    • [gmx-users] Re: grompp warnings/errors I haven't seen before   bharat v. adkar
• [gmx-users] use of distance dependent dielctric   kinshuk at chem.iitb.ac.in
  • [gmx-users] use of distance dependent dielctric   Mark Abraham
    • [gmx-users] use of distance dependent dielctric   Ran Friedman
      • [gmx-users] use of distance dependent dielctric   David van der Spoel
• [gmx-users] Re: gromacs installation (some broken links in wiki?)   Carsten Kutzner
  • [gmx-users] Re: gromacs installation (some broken links in wiki?)   Mark Abraham
• [gmx-users] topology treatment in free energy calculations - possible bug   Maik Goette
  • [gmx-users] topology treatment in free energy calculations -possible bug   Berk Hess
    • [gmx-users] topology treatment in free energy calculations -possible bug   Maik Goette
  • [gmx-users] topology treatment in free energy calculations - possible bug   David Mobley
  • [gmx-users] topology treatment in free energy calculations - possible bug   bharat v. adkar
• [gmx-users] topology treatment in free energy calculations - possible bug_2nd   Maik Goette
  • [gmx-users] topology treatment in free energy calculations - possible bug_2nd   David Mobley
• [gmx-users] Question regarding compatibility of UFF and GROMACS   Subhashis Biswas
  • [gmx-users] Question regarding compatibility of UFF and GROMACS   David van der Spoel
  • [gmx-users] Question regarding compatibility of UFF and GROMACS   Yang Ye
• [gmx-users] problem with result from g_rdf   Sheyore Omovie
• [gmx-users] Gromacs version   Ragothaman Yennamalli
  • [gmx-users] Gromacs version   Tsjerk Wassenaar
    • [gmx-users] Gromacs version   Mark Abraham
    • [gmx-users] Gromacs version   Ragothaman Yennamalli
• [gmx-users] tersoff potentials   abhishek sharma
  • [gmx-users] tersoff potentials   David van der Spoel
• [gmx-users] energy perturbation   Farzad Molani
  • [gmx-users] energy perturbation   Mark Abraham
    • [gmx-users] energy perturbation   Farzad Molani
      • [gmx-users] energy perturbation   Maik Goette
• [gmx-users] core shell potentials   abhishek sharma
  • [gmx-users] core shell potentials   David van der Spoel
• [gmx-users] energy perturbation   Farzad Molani
• [gmx-users] g_hbond -contact -xpm does not work   Michel Cuendet
  • [gmx-users] g_hbond -contact -xpm does not work   David van der Spoel
  • [gmx-users] g_hbond -contact -xpm does not work   David van der Spoel
  • [gmx-users] g_hbond -contact -xpm does not work   David van der Spoel
  • [gmx-users] g_hbond -contact -xpm does not work   David van der Spoel
  • [gmx-users] g_hbond -contact -xpm does not work   David van der Spoel
• [gmx-users] RE: problem with result from g_rdf   van Bemmelen
• [gmx-users] About a "general" force field   Francesco Pietra
  • [gmx-users] About a "general" force field   David van der Spoel
• [gmx-users] Mn parameters   andrea spitaleri
  • [gmx-users] Mn parameters   andrea spitaleri
• [gmx-users] replica exchange output information   David Mobley
  • [gmx-users] replica exchange output information   David van der Spoel
    • [gmx-users] replica exchange output information   David Mobley
      • [gmx-users] replica exchange output information   David van der Spoel
      • [gmx-users] replica exchange output information   David Mobley
      • [gmx-users] replica exchange output information   David van der Spoel
      • [gmx-users] replica exchange output information   Mark Abraham
      • [gmx-users] replica exchange output information   Mark Abraham
      • [gmx-users] replica exchange output information   Berk Hess
• [gmx-users] a question   yc04023
  • [gmx-users] a question   Justin A. Lemkul
  • [gmx-users] a question   Mark Abraham
• [gmx-users] shell model[ defaults ] LJ Geometric [ atomtypes ] ; name mass charge ptype c6 c12 WO 15.99940 0.0 A 0.0 0.0 WH 1.00800 0.0 A 0.0 0.0 WS 0.0 0.0 S 0.0 0.0 WD 0.0 0.0 D 0.0 0.0 [ nonbond_params ] #ifdef RIGID #ifdef ANISOTROPIC WH WH 1 4.0e-5 4.0e-8 WS   abhishek sharma
  • [gmx-users] shell model   David van der Spoel
• [gmx-users] demux.pl   xi zhao
  • [gmx-users] demux.pl   Mark Abraham
    • 回复： Re: [gmx-users] demux.pl   xi zhao
      • ??: Re: [gmx-users] demux.pl   David van der Spoel
      • ??: Re: [gmx-users] demux.pl   Mark Abraham
      • ??: Re: [gmx-users] demux.pl   David van der Spoel
• [gmx-users] Drug-Enzyme Tutorial   SWAPNA
  • [gmx-users] Drug-Enzyme Tutorial   Tsjerk Wassenaar
  • [gmx-users] Drug-Enzyme Tutorial   Justin A. Lemkul
• [gmx-users] Re: Different system volumes from gromacs versions 3.2.1 and 3.3.1   Perttu Niemela
  • [gmx-users] Re: Different system volumes from gromacs versions 3.2.1 and 3.3.1   Xavier Periole
• [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mitra Kheirabadi
  • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Tsjerk Wassenaar
    • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mitra Kheirabadi
  • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Xavier Periole
    • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mitra Kheirabadi
      • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mitra Kheirabadi
      • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mark Abraham
      • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mitra Kheirabadi
      • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Maik Goette
      • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mitra Kheirabadi
      • [gmx-users] How can I add ffG43a1p force field to gromacs software?   Mark Abraham
• [gmx-users] do_dssp file format   ABEL Stephane 175950
  • [gmx-users] do_dssp file format   Mark Abraham
• [gmx-users] g_density   Antonia Vyrkou
• [gmx-users] how to run MD of a new molecule using OPLS   Egidijus Kuprusevicius
  • [gmx-users] how to run MD of a new molecule using OPLS   Mark Abraham
    • [gmx-users] how to run MD of a new molecule using OPLS   David van der Spoel
• [gmx-users] g_density   Alan Dodd
• [gmx-users] Search doesn't work past May 2007   van Bemmelen
  • [gmx-users] Search doesn't work past May 2007   David van der Spoel
• [gmx-users] Protocol describing how to add a new force field into Gromacs   Tandia, Adama
  • [gmx-users] Protocol describing how to add a new force field into Gromacs   Mark Abraham
• [gmx-users] Re: The results of your email commands   Farzad Molani
• [gmx-users] Re: energy perturbation   Farzad Molani
• [gmx-users] Re: energy perturbation   Farzad Molani
• [gmx-users] Tabulated non-bonding interactions and speed   Ran Friedman
  • [gmx-users] Tabulated non-bonding interactions and speed   David van der Spoel
• [gmx-users] Umbrella Sampling options   Dechang Li
  • [gmx-users] Umbrella Sampling options   Jochen Hub
• [gmx-users] Different system volumes from gromacs versions 3.2.1 and 3.3.1   Perttu Niemela
• [gmx-users] Targeted MD   Stanislav Bobritsky
  • [gmx-users] Targeted MD   Mark Abraham
  • [gmx-users] Targeted MD   Ran Friedman
• [gmx-users] Re: Targeted MD   Stanislav Bobritsky
• [gmx-users] Re: Targeted MD   Stanislav Bobritsky
  • [gmx-users] Re: Targeted MD   Ran Friedman
  • [gmx-users] Re: Targeted MD   Berk Hess
    • [gmx-users] Re: Targeted MD   Stanislav Bobritsky
      • [gmx-users] Re: Targeted MD   Mark Abraham
      • [gmx-users] Re: Targeted MD   wei-xin xu
      • [gmx-users] Re: Targeted MD   Yang Ye
      • [gmx-users] Re: Targeted MD   Mark Abraham
      • [gmx-users] Re: Targeted MD   Novice
• [gmx-users] g_covar   tangxuan
  • [gmx-users] g_covar   Berk Hess
    • [gmx-users] g_covar   tangxuan
      • [gmx-users] g_covar   Mark Abraham
      • [gmx-users] g_covar   tangxuan
      • [gmx-users] g_covar   Mark Abraham
      • [gmx-users] g_covar   tangxuan
• [gmx-users] g_density oscilations   Antonia Vyrkou
• [gmx-users] on pdb files structure   Egidijus Kuprusevicius
  • [gmx-users] on pdb files structure   Mark Abraham
• [gmx-users] Dihedral with parameters set to zero   van Bemmelen
  • [gmx-users] Dihedral with parameters set to zero   David van der Spoel
• [gmx-users] rmsd fluctuation of the dihedrals   Prasad Gajula
  • [gmx-users] rmsd fluctuation of the dihedrals   David van der Spoel
• [gmx-users] Pi Stacking in OPLSAA ff   Ramya Cherukupalli
  • [gmx-users] Pi Stacking in OPLSAA ff   David van der Spoel
• [gmx-users] Generating topology file for a molecule (FNP) not in the gromacs library.   Mufaddal Soni
  • [gmx-users] Generating topology file for a molecule (FNP) not in the gromacs library.   Justin A. Lemkul
  • [gmx-users] Generating topology file for a molecule (FNP) not in the gromacs library.   Jochen Hub
• [gmx-users] do_dssp file format   ABEL Stephane 175950
  • [gmx-users] do_dssp file format   Justin A. Lemkul
• [gmx-users] Re: Targeted MD   Steven Kirk
  • [Bulk] Re: [gmx-users] Re: Targeted MD   Yang Ye
  • [gmx-users] Re: Targeted MD   Mark Abraham
• [gmx-users] use do_dssp with only pdb file with many configurations in it   ABEL Stephane 175950
  • [gmx-users] use do_dssp with only pdb file with many configurations in it   Tsjerk Wassenaar
• [gmx-users] Dihedral with parameters set to zero   van Bemmelen
  • [gmx-users] Dihedral with parameters set to zero   David van der Spoel
• [gmx-users] RE: gmx-users Digest, Vol 45, Issue 28   van Bemmelen
• [gmx-users] Generating topology file for a molecule (FNP) not in the gromacs library.   van Bemmelen
• [gmx-users] Generating topology file for a molecule (FNP) not in the gromacs library.   Chris Neale
  • [gmx-users] Generating topology file for a molecule (FNP) not in the gromacs library.   Tsjerk Wassenaar
  • [gmx-users] Generating topology file for a molecule (FNP) not in the gromacs library.   Maik Goette
• [gmx-users] rmsd with average structure   Prasad Gajula
  • [gmx-users] rmsd with average structure   David van der Spoel
• [gmx-users] Re: gmx-users Digest, Vol 45, Issue 30   Prasad Gajula
  • [gmx-users] Re: gmx-users Digest, Vol 45, Issue 30   David van der Spoel
    • [gmx-users] Re: gmx-users Digest, Vol 45, Issue 30   Tsjerk Wassenaar
• [gmx-users] Dihedral with parameters set to zero   van Bemmelen
  • [gmx-users] Dihedral with parameters set to zero   Maik Goette
• [gmx-users] do_dssp file format   ABEL Stephane 175950
  • [gmx-users] do_dssp file format   David van der Spoel
• [gmx-users] Asking help about PME   xuji
  • [gmx-users] Asking help about PME   Mark Abraham
  • [gmx-users] Asking help about PME   Yang Ye
• [gmx-users] (no subject)   kinshuk at chem.iitb.ac.in
  • [gmx-users] (no subject)   Mark Abraham
• [gmx-users] x2top & Library file ffG43a1.n2t   kinshuk at chem.iitb.ac.in
  • [gmx-users] x2top & Library file ffG43a1.n2t   David van der Spoel
• [gmx-users] Problems with GROMPP   Jens Pohl
  • [gmx-users] Problems with GROMPP   David van der Spoel
  • [gmx-users] Problems with GROMPP   Mark Abraham
  • [gmx-users] Problems with GROMPP   Jochen Hub
• [gmx-users] difference between my_dssp and do_dssp   ABEL Stephane 175950
  • [gmx-users] difference between my_dssp and do_dssp   David van der Spoel
• [gmx-users] Fwd: x2top   Tsjerk Wassenaar
• [gmx-users] residue index   tangxuan
  • [gmx-users] residue index   David van der Spoel
• [gmx-users] doubt about constrain   sudheer babu
  • [gmx-users] doubt about constrain   Mark Abraham
• [gmx-users] g_rdf -[no]com   Vasilii Artyukhov
  • [gmx-users] g_rdf -[no]com   David van der Spoel
    • [gmx-users] g_rdf -[no]com   Vasilii Artyukhov
      • [gmx-users] g_rdf -[no]com   Berk Hess
      • [gmx-users] g_rdf -[no]com   Vasilii Artyukhov
• [gmx-users] Problems with GROMPP   Jens Pohl
  • [gmx-users] Problems with GROMPP   Mark Abraham
• [gmx-users] do_dssp file format   ABEL Stephane 175950
  • [gmx-users] do_dssp file format   Justin A. Lemkul
• [gmx-users] chromophore parameters for Molecular Dynamics   Anthony Cruz
  • [gmx-users] chromophore parameters for Molecular Dynamics   Justin A. Lemkul
• [gmx-users] RE : gmx-users Digest, Vol 45, Issue 36   ABEL Stephane 175950
  • [gmx-users] RE : gmx-users Digest, Vol 45, Issue 36   Justin A. Lemkul
  • [gmx-users] RE : gmx-users Digest, Vol 45, Issue 36   Mark Abraham
• [gmx-users] Invalid order for directive defaults   Myunggi Yi
  • [gmx-users] Invalid order for directive defaults   Mark Abraham
• [gmx-users] Re: Invalid order for directive defaults   Myunggi Yi
• [gmx-users] Number of degrees of freedom for generating velocities   Esteban Vöhringer
  • [gmx-users] Number of degrees of freedom for generating velocities   David van der Spoel
• [gmx-users] do_dssp file format   ABEL Stephane 175950
  • [gmx-users] do_dssp file format   David van der Spoel
  • [gmx-users] do_dssp file format   Justin A. Lemkul
  • [gmx-users] do_dssp file format   Mark Abraham
• [gmx-users] About g_msd   Justin A. Lemkul
  • [gmx-users] About g_msd   Xavier Periole
    • [gmx-users] About g_msd   Justin A. Lemkul
• [gmx-users] Fatal error: atoms 970 and 973 in charge group 600 are in different energy groups   Mao-Cai Yan
  • [gmx-users] Fatal error: atoms 970 and 973 in charge group 600 are in different energy groups   Mark Abraham
  • [gmx-users] Fatal error: atoms 970 and 973 in charge group 600 are in different energy groups   Yang Ye
• [gmx-users] Proble while running minimization using .tpr file   kinshuk at chem.iitb.ac.in
  • [gmx-users] Proble while running minimization using .tpr file   Xavier Periole
• [gmx-users] lipid simulation at low temperature   xingang shi
  • [gmx-users] lipid simulation at low temperature   Xavier Periole
• [gmx-users] Quick equilibration   Myunggi Yi
  • [gmx-users] Quick equilibration   David van der Spoel
    • [gmx-users] Quick equilibration   Myunggi Yi
• [gmx-users] Error with g_angle: VERSION 3.3.2   Sergio
  • [gmx-users] Error with g_angle: VERSION 3.3.2   David van der Spoel
• [gmx-users] Zdock   Siavoush Dastmalchi
  • [gmx-users] Zdock   Mark Abraham
• [gmx-users] [Fwd: lipid simulation at low temperature (please help me to transmit the letter )]   Yang Ye
  • [gmx-users] [Fwd: lipid simulation at low temperature (please help me to transmit the letter )]   Mark Abraham
• [gmx-users] Problems with GROMPP   Jens Pohl
  • [gmx-users] Problems with GROMPP   Mark Abraham
  • [gmx-users] Problems with GROMPP   Justin A. Lemkul
• [gmx-users] GromacsGUI 0.5.2 is available.   Reza Salari
• [gmx-users] About the mdp file when doing umbrella samping simulation   Novice
• [gmx-users] do_dssp file format   ABEL Stephane 175950
  • [gmx-users] do_dssp file format   Mark Abraham
• [gmx-users] grompp problem with trr input option....   sgaray at fbcb.unl.edu.ar
  • [gmx-users] grompp problem with trr input option....   David van der Spoel
• [gmx-users] about details of the topology file.   Mufaddal Soni
  • [gmx-users] about details of the topology file.   Jochen Hub
• [gmx-users] Re: gmx-users Digest, Vol 45, Issue 29   Mufaddal Soni
• [gmx-users] do_dssp file format   ABEL Stephane 175950
  • [gmx-users] do_dssp file format   David van der Spoel
• [gmx-users] CG energy minimization   Myunggi Yi
  • [gmx-users] CG energy minimization   Mark Abraham
    • [gmx-users] CG energy minimization   Myunggi Yi
      • [gmx-users] CG energy minimization   Mark Abraham
      • [gmx-users] CG energy minimization   Myunggi Yi
      • [gmx-users] CG energy minimization   Justin A. Lemkul
      • [gmx-users] CG energy minimization   Myunggi Yi
      • [gmx-users] CG energy minimization   Xavier Periole
      • [gmx-users] CG energy minimization   Mark Abraham
      • [gmx-users] CG energy minimization   Mark Abraham
• [gmx-users] about parallel run   Yunierkis Perez Castillo
  • [gmx-users] about parallel run   Mark Abraham
    • [gmx-users] about parallel run   Yang Ye
    • [gmx-users] about parallel run   Yunierkis Perez Castillo
• [gmx-users] Problems with GROMPP   Jens Pohl
  • [gmx-users] Problems with GROMPP   Mark Abraham
• [gmx-users] Problems with GROMPP   Jens Pohl
• [gmx-users] Go-model Hamiltonian   eddie mendel
  • [gmx-users] Go-model Hamiltonian   Xavier Periole
• [gmx-users] image control   Myunggi Yi
• [gmx-users] image control   Alan Dodd
  • [gmx-users] image control   Myunggi Yi
    • [gmx-users] image control   Justin A. Lemkul
      • [gmx-users] image control   Tsjerk Wassenaar
      • [gmx-users] image control   Myunggi Yi
      • [gmx-users] image control   Myunggi Yi
      • [gmx-users] image control   Justin A. Lemkul
      • [gmx-users] image control   Myunggi Yi
      • [gmx-users] image control   Mark Abraham
      • [gmx-users] image control   Myunggi Yi
      • [gmx-users] image control   Mark Abraham
      • [gmx-users] image control   Tsjerk Wassenaar
      • [gmx-users] image control   Myunggi Yi
      • [gmx-users] image control   Tsjerk Wassenaar
• [gmx-users] interchain bond   Velia Minicozzi
  • [gmx-users] interchain bond   Xavier Periole
    • [gmx-users] interchain bond   Jochen Hub
    • [gmx-users] interchain bond   Velia Minicozzi
    • [gmx-users] interchain bond   Velia Minicozzi
      • [gmx-users] interchain bond   Xavier Periole
      • [gmx-users] interchain bond   Velia Minicozzi
• [gmx-users] Problems with GROMPP   chris.neale at utoronto.ca
• [gmx-users] about parallel run   chris.neale at utoronto.ca
  • [gmx-users] about parallel run   Yunierkis Perez Castillo
• [gmx-users] image control   Alan Dodd
  • [gmx-users] image control   Myunggi Yi
• [gmx-users] Problems with GROMPP   Jens Pohl
• [gmx-users] dynamic cross correlation map   Qi Yan
• [gmx-users] how to create tpr file from pdb created with Hyperhem for using with OPLS   Egidijus Kuprusevicius
  • [gmx-users] how to create tpr file from pdb created with Hyperhem for using with OPLS   Mark Abraham
• [gmx-users] About g_msd   Justin A. Lemkul
• [gmx-users] About g_msd   Alan Dodd
  • [gmx-users] About g_msd   Justin A. Lemkul
    • [gmx-users] About g_msd   David van der Spoel
      • [gmx-users] About g_msd   Justin A. Lemkul
    • [gmx-users] About g_msd   Patrick Fuchs
      • [gmx-users] About g_msd   Justin A. Lemkul
• [gmx-users] fatal errors in parallel but not on single processor   Patricia Francis-Lyon
  • [gmx-users] fatal errors in parallel but not on single processor   David van der Spoel
  • [gmx-users] fatal errors in parallel but not on single processor   Mark Abraham
• [gmx-users] Re: gmx-users Digest, Vol 45, Issue 60   Egidijus Kuprusevicius
  • [gmx-users] free energy calculation   Li Qiang
    • [gmx-users] free energy calculation   Maik Goette
• [gmx-users] N terminus charge groups in ffG53a6   van Bemmelen
  • [gmx-users] N terminus charge groups in ffG53a6   David van der Spoel
• [gmx-users] how to get charmm force field input file for MD   sarbani chattopadhyay
  • [gmx-users] how to get charmm force field input file for MD   Mark Abraham
• [gmx-users] charmm force field   sarbani chattopadhyay
• [gmx-users] RE: free energy calculation   Spiwok Vojtech
• [gmx-users] polyatomic ion additon by genion   kinshuk at chem.iitb.ac.in
  • [gmx-users] polyatomic ion additon by genion   David van der Spoel
    • [gmx-users] polyatomic ion additon by genion   kinshuk at chem.iitb.ac.in
• [gmx-users] Re: how to create tpr file from pdb created with Hyperhem for using with OPLS   Egidijus Kuprusevicius
  • [gmx-users] Re: how to create tpr file from pdb created with Hyperhem for using with OPLS   Mark Abraham
• [gmx-users] About g_msd (and noise)   Alan Dodd
  • [gmx-users] About g_msd (and noise)   David van der Spoel
  • [gmx-users] About g_msd (and noise)   Patrick Fuchs
• [gmx-users] how to perform a minimization of an isolated drug   Sergio de Alencar
  • [gmx-users] how to perform a minimization of an isolated drug   Justin A. Lemkul
• [gmx-users] Re: Go-model Hamiltonian (Xavier Periole)   eddie mendel
  • [gmx-users] Re: Go-model Hamiltonian (Xavier Periole)   Xavier Periole
• [gmx-users] position restraint on a plane   Myunggi Yi
  • [gmx-users] position restraint on a plane   David van der Spoel
    • [gmx-users] position restraint on a plane   Myunggi Yi
      • [gmx-users] position restraint on a plane   Mark Abraham
      • [gmx-users] position restraint on a plane   Myunggi Yi
      • [gmx-users] position restraint on a plane   Justin A. Lemkul
      • [gmx-users] position restraint on a plane   Xavier Periole
• [gmx-users] position restraint on a plane   Anirban Mudi
  • [gmx-users] position restraint on a plane   Myunggi Yi
    • [gmx-users] position restraint on a plane   Mark Abraham
• [gmx-users] FEP trajectory errors   Robert Johnson
  • [gmx-users] FEP trajectory errors   Maik Goette
  • [gmx-users] FEP trajectory errors   David Mobley
    • [gmx-users] FEP trajectory errors   Robert Johnson
      • [gmx-users] FEP trajectory errors   Maik Goette
      • [gmx-users] FEP trajectory errors   Robert Johnson
      • [gmx-users] FEP trajectory errors   Maik Goette
      • [gmx-users] FEP trajectory errors   Robert Johnson
• [gmx-users] MPI issue   Paul Whitford
  • [gmx-users] MPI issue   David van der Spoel
  • [gmx-users] MPI issue   Carsten Kutzner
• [gmx-users] Changing source code of GROMACS   avinash kumar
  • [gmx-users] Changing source code of GROMACS   David van der Spoel
• [gmx-users] error running gromacs usinh charmm force field   sarbani chattopadhyay
  • [gmx-users] error running gromacs usinh charmm force field   Justin A. Lemkul
  • [gmx-users] error running gromacs usinh charmm force field   Mark Abraham
• [gmx-users] error running gromacs usinh charmm force field   sarbani chattopadhyay
• [gmx-users] do_dssp file format, Resolved !!!   ABEL Stephane 175950
• [gmx-users] Parrinello-Rahman coupling and constant slight evolution of box sides   Jean-Paul Becker
• [gmx-users] problem with GROMACS parallelization   Anna Marabotti
  • [gmx-users] problem with GROMACS parallelization   Mark Abraham
  • [gmx-users] problem with GROMACS parallelization   Carsten Kutzner
• [gmx-users] fit the secondary structure time serie graph in page   ABEL Stephane 175950
  • [gmx-users] fit the secondary structure time serie graph in page   Justin A. Lemkul
• [gmx-users] How to remove H atom from residue in gro file?   Nelson Cotrim
  • [gmx-users] How to remove H atom from residue in gro file?   Justin A. Lemkul
    • [gmx-users] How to remove H atom from residue in gro file?   Nelson Cotrim
      • [gmx-users] How to remove H atom from residue in gro file?   Justin A. Lemkul
      • [gmx-users] How to remove H atom from residue in gro file?   Justin A. Lemkul
      • [gmx-users] How to remove H atom from residue in gro file?   Nelson Cotrim
  • [gmx-users] How to remove H atom from residue in gro file?   Maik Goette
    • [gmx-users] error while running grompp   Ragothaman Yennamalli
      • [gmx-users] error while running grompp   Mark Abraham
      • [gmx-users] error while running grompp   Ragothaman Yennamalli
      • [gmx-users] error while running grompp   Mark Abraham
    • [gmx-users] How to remove H atom from residue in gro file?   Nelson Cotrim
• [gmx-users] Re: image control   chris.neale at utoronto.ca
• [gmx-users] Parrinello-Rahman coupling and constant slight evolution of box sides   Chris Neale
• [gmx-users] Gromacs installation: cannot find LibXmu.la   Andreas Kukol
  • [gmx-users] Gromacs installation: cannot find LibXmu.la   Diego Enry
  • [gmx-users] Gromacs installation: cannot find LibXmu.la   Carsten Kutzner
• [gmx-users] fit the secondary structure time serie graph in page   ABEL Stephane 175950
• [gmx-users] problem regarding grompp   kinshuk at chem.iitb.ac.in
  • [gmx-users] problem regarding grompp   Mark Abraham
    • [gmx-users] problem regarding grompp   kinshuk at chem.iitb.ac.in
      • [gmx-users] problem regarding grompp   Mark Abraham
      • [gmx-users] problem regarding range checking error   kinshuk at chem.iitb.ac.in
• [gmx-users] GMX CPMD K+ ion problem   Andrey V Golovin
  • [gmx-users] GMX CPMD K+ ion problem   Marius Retegan
    • [gmx-users] GMX CPMD K+ ion problem   Andrey V Golovin
• [gmx-users] Virtual site and constraints   Нилов Дмитрий
• [gmx-users] Virtual site and constraints   Нилов Дмитрий
  • [gmx-users] Virtual site and constraints   David van der Spoel
    • Re[2]: [gmx-users] Virtual site and constraints   Нилов Дмитрий
      • [gmx-users] Virtual site and constraints   David van der Spoel
      • Re[2]: [gmx-users] Virtual site and constraints   Нилов Дмитрий
      • [gmx-users] Virtual site and constraints   David van der Spoel
• [gmx-users] source code   avinash kumar
  • [gmx-users] source code   Xavier Periole
• [gmx-users] source code change   avinash kumar
  • [gmx-users] source code change   David van der Spoel
  • [gmx-users] source code change   Maik Goette
• [gmx-users] Re: GMX CPMD K+ ion problem   ggroenh
  • [gmx-users] Re: GMX CPMD K+ ion problem   Andrey V Golovin
    • [gmx-users] Re: GMX CPMD K+ ion problem   Marius Retegan
      • [gmx-users] Re: GMX CPMD K+ ion problem   Andrey V Golovin
• [gmx-users] Orientation restraints from FTIR   Hadas Leonov
• [gmx-users] Modified Lennard Jones potential   avinash kumar
  • [gmx-users] Modified Lennard Jones potential   Mark Abraham
• [gmx-users] a problem,Thank you   jdy19862002 at 126.com
  • [gmx-users] HPC-EUROPA   Xavier Periole
  • [gmx-users] a problem,Thank you   Maik Goette
• [gmx-users] Question Regarding Ligand-Enzyme Complex   Mark Zottola
  • [gmx-users] Question Regarding Ligand-Enzyme Complex   Mark Abraham
    • [gmx-users] Question Regarding Ligand-Enzyme Complex   Mark Zottola
      • [gmx-users] Question Regarding Ligand-Enzyme Complex   Berk Hess
      • [gmx-users] Question Regarding Ligand-Enzyme Complex   David Mobley
• [gmx-users] Gff53a6.rtp error (at least GMX331)   Mitchell Stanton-Cook
  • [gmx-users] Gff53a6.rtp error (at least GMX331)   Mitchell Stanton-Cook
• [gmx-users] GromacsInstallation on Solaris 10   Sangamesh B
• [gmx-users] source code change   avinash kumar
  • [gmx-users] source code change   Maik Goette
• [gmx-users] Serious mistake in the manual ! In the code too ?!   BON Michael
  • [gmx-users] RE: Serious mistake in the manual ! In the code too ?!   Berk Hess
  • [gmx-users] Serious mistake in the manual ! In the code too ?!   David van der Spoel
• [gmx-users] t-coupling and freeze groups   Zhou Bo
• [gmx-users] Specified frame doesn't exist or file not seekable   Arnau Cordomi
• [gmx-users] Specified frame doesn't exist or file not seekable   Alan Dodd
  • [gmx-users] Specified frame doesn't exist or file not seekable   Arnau Cordomi
• [gmx-users] RE : Serious mistake in the manual !   BON Michael
• [gmx-users] parallel compilation fails   gleb solomentsev
  • [gmx-users] parallel compilation fails   David van der Spoel
• [gmx-users] fatal errors in parallel but not on single processor   Patricia Francis-Lyon
• [gmx-users] Trajectory files are too big   Nabajyoti Goswami
  • [gmx-users] Trajectory files are too big   Bjoern Windshuegel
  • [gmx-users] Trajectory files are too big   Andreas Kukol
  • [gmx-users] Trajectory files are too big   Mark Abraham
    • [gmx-users] Trajectory files are too big   Nabajyoti Goswami
• [gmx-users] R:Re: problem with GROMACS parallelization   Anna Marabotti
• [gmx-users] Protein Moving Out of Box in ED   Anirban Ghosh
  • [gmx-users] Protein Moving Out of Box in ED   Xavier Periole
• [gmx-users] grompp error with charmm   sarbani chattopadhyay
  • [gmx-users] grompp error with charmm   Xavier Periole
• [gmx-users] mdrun CVS version crashes instantly when run across nodes in parallel   Erik Brandt
  • [gmx-users] mdrun CVS version crashes instantly when run across nodes in parallel   Carsten Kutzner
• [gmx-users] Cuted trr file not readable   Edvin Erdtman
  • [gmx-users] Cuted trr file not readable   Jochen Hub
• [gmx-users] Is there any chance to concatenate (fast) more than 1000 energy files....   Sergio
  • [gmx-users] Is there any chance to concatenate (fast) more than 1000 energy files....   Diego Enry
  • [gmx-users] Is there any chance to concatenate (fast) more than 1000 energy files....   Mark Abraham
• [Fwd: Re: [gmx-users] mdrun CVS version crashes instantly when run across nodes in parallel]   Carsten Kutzner
  • [Fwd: Re: [gmx-users] mdrun CVS version crashes instantly when run across nodes in parallel]   Berk Hess
    • [Fwd: Re: [gmx-users] mdrun CVS version crashes instantly when run across nodes in parallel]   Erik Brandt
• [gmx-users] [gmx-developers] double precision, gmx-3.3.1 and 3.3.2 do not work for me   David.Osguthorpe at UCHSC.edu
• [gmx-users] solvent within 3.5 angstrom of protein.   David.Osguthorpe at UCHSC.edu
  • [gmx-users] solvent within 3.5 angstrom of protein.   David van der Spoel
• [gmx-users] Is there any chance to concatenate (fast) more, than 1000 energy files....   Sergio
  • [gmx-users] Is there any chance to concatenate (fast) more, than 1000 energy files....   Justin A. Lemkul
• [gmx-users] problems with double precision gmx   Michael Brunsteiner
• [gmx-users] Re: problems with double precision gmx - solved   Michael Brunsteiner
• [gmx-users] potential tables not working   avinash kumar
• [gmx-users] Is there any chance to concatenate (fast) more than 1000 energy files....(Solved!!!)   Sergio Garay
• [gmx-users] comm_grps   priyanka srivastava
  • [gmx-users] comm_grps   Jochen Hub
• [gmx-users] installation problem for MAC OS   Yunan Yan
  • [gmx-users] installation problem for MAC OS   Per Larsson
• [gmx-users] deshuf.ndx doesn't work for forces?   LuLanyuan
  • [gmx-users] deshuf.ndx doesn't work for forces?   David van der Spoel
• [gmx-users] Which forcefield should I use?   Rui Li
  • [gmx-users] Which forcefield should I use?   Tsjerk Wassenaar
• [gmx-users] Re: installation problem for MAC OS   Yunan Yan
• [gmx-users] Problem while extending simulation time by tpbconv   Anirban Ghosh
  • [gmx-users] Problem while extending simulation time by tpbconv   Justin A. Lemkul
• [gmx-users] restraint numbering in g_disre output   Bruce Milne
  • [gmx-users] restraint numbering in g_disre output   Berk Hess
• [gmx-users] Shake block errors with d.lzm   Ganesh CN
  • [gmx-users] Shake block errors with d.lzm   David van der Spoel
    • [gmx-users] Shake block errors with d.lzm   Ganesh CN
      • [gmx-users] Shake block errors with d.lzm   David van der Spoel
      • [gmx-users] Shake block errors with d.lzm   Mark Abraham
• [gmx-users] comm_grps   priyanka srivastava
• [gmx-users] deshuf.ndx doesn't work for forces?   chris.neale at utoronto.ca
  • [gmx-users] deshuf.ndx doesn't work for forces?   LuLanyuan
• [gmx-users] deshuf.ndx doesn't work for forces?   Chris Neale
  • [gmx-users] Re: deshuf.ndx doesn't work for forces?   Chris Neale
    • [gmx-users] Re: deshuf.ndx doesn't work for forces?   LuLanyuan
    • [gmx-users] Re: deshuf.ndx doesn't work for forces?   Mark Abraham
• [gmx-users] Re: deshuf.ndx doesn't work for forces?   Chris Neale
• [gmx-users] polyatomic ion additon by genion & genbox   kinshuk at chem.iitb.ac.in
• [gmx-users] How to use .edo file to get information?   Anirban Ghosh
• [gmx-users] interface between Gromacs & CPMD   Yunan Yan
• [gmx-users] GROMACS 3.3.3 ?   Moore, Jonathan (J)
• [gmx-users] problems in rtp while runing pdb2gmx   Egidijus Kuprusevicius
  • [gmx-users] problems in rtp while runing pdb2gmx   Justin A. Lemkul
• [gmx-users] Question about analysing micelle structure   Alif M Latif
  • [gmx-users] Question about analysing micelle structure   Ran Friedman
• [gmx-users] Grompp error   Jens Pohl
  • [gmx-users] Grompp error   Justin A. Lemkul
• [gmx-users] Question about analysing micelle structure   Chris Neale
• [gmx-users] grompp problem   Jens Pohl
  • [gmx-users] grompp problem   Justin A. Lemkul
• [gmx-users] grompp problem   Chris Neale
• [gmx-users] grompp problem   Jens Pohl
• Re[2]: [gmx-users] Virtual site and constraints   Нилов Дмитрий
  • [gmx-users] Virtual site and constraints   Maik Goette
    • Re: [gmx-users] Virtual site and constraints   Нилов Дмитрий
• [gmx-users] error in .gro file   Egidijus Kuprusevicius
  • [gmx-users] error in .gro file   Justin A. Lemkul
• [gmx-users] Rugged dG/dlambda when turning off charges   Robert Johnson
  • [gmx-users] Rugged dG/dlambda when turning off charges   David Mobley
    • [gmx-users] Rugged dG/dlambda when turning off charges   Robert Johnson
      • [gmx-users] Rugged dG/dlambda when turning off charges   David Mobley
      • [gmx-users] Rugged dG/dlambda when turning off charges   Maik Goette
      • [gmx-users] Rugged dG/dlambda when turning off charges   Robert Johnson
  • [gmx-users] Rugged dG/dlambda when turning off charges   Maik Goette
• [gmx-users] g_densmap per slice   Sung Hyun Park
• [gmx-users] Re: Problem in adding Ryckaert-Bell. types using charmm   Mark Abraham
• [gmx-users] Rugged dG/dlambda when turning off charges   van Bemmelen
• [gmx-users] grompp problem   Jens Pohl
• [gmx-users] problem regarding editconf   sudheer babu
  • [gmx-users] problem regarding editconf   Mark Abraham
• [gmx-users] ask help for Potential energy curve calculation   Yunan Yan
• [gmx-users] energy minimization breaks freeze group apart   Patricia Francis-Lyon
  • [gmx-users] energy minimization breaks freeze group apart   Xavier Periole
• [gmx-users] dihedral restraints in v3.3 different than v3.3.1 (or broken)   chris.neale at utoronto.ca
  • [gmx-users] dihedral restraints in v3.3 different than v3.3.1 (or broken)   Behnoush Zare
    • [gmx-users] dihedral restraints in v3.3 different than v3.3.1 (or broken)   Mark Abraham
  • [gmx-users] dihedral restraints in v3.3 different than v3.3.1 (or broken)   David Mobley
• [gmx-users] ihedral restraints in v3.3 different than dihedral restraints in v3.3 different than v3.3 (or broken)   chris.neale at utoronto.ca
• [gmx-users] dihedral restraints wiki section   chris.neale at utoronto.ca
  • [gmx-users] dihedral restraints wiki section   Behnoush Zare
    • [gmx-users] dihedral restraints wiki section   Xavier Periole
      • [gmx-users] dihedral restraints wiki section   Behnoush Zare
      • [gmx-users] dihedral restraints wiki section   Mark Abraham
• [gmx-users] GROMACS ON CYGWIN.   DAVID RINCON
  • [gmx-users] GROMACS ON CYGWIN.   Mark Abraham
    • [gmx-users] GROMACS ON CYGWIN.   Nabajyoti Goswami
• [gmx-users] Problem regarding Complex ion addition by genbox   kinshuk at chem.iitb.ac.in
• [gmx-users] X.gro file for different solvent system   kinshuk at chem.iitb.ac.in
  • [gmx-users] X.gro file for different solvent system   David van der Spoel
• [gmx-users] Problem regarding Complex ion addition by genbox   chris.neale at utoronto.ca
  • [gmx-users] Problem regarding Complex ion addition by genbox   kinshuk at chem.iitb.ac.in
• [gmx-users] Question   Hassan Shafiey
  • [gmx-users] Question   Mark Abraham
• [gmx-users] Adding OH- ions to a system   Subhrangshu Supakar
  • [gmx-users] Adding OH- ions to a system   Ran Friedman
• [gmx-users] query related to rerunning MD   Ragothaman Yennamalli
  • [gmx-users] query related to rerunning MD   Xavier Periole
• [gmx-users] Problem regarding Complex ion addition by genbox   chris.neale at utoronto.ca
  • [gmx-users] Problem regarding Complex ion addition by genbox   kinshuk at chem.iitb.ac.in
• [gmx-users] Position Restraints MD   Philip Shushkov
  • [gmx-users] Position Restraints MD   Mark Abraham
    • [gmx-users] Position Restraints MD   Philip Shushkov
      • [gmx-users] Position Restraints MD   Mark Abraham
• [gmx-users] Magic Number Error   alessandro casoni
  • [gmx-users] Magic Number Error   Xavier Periole
  • [gmx-users] Magic Number Error   Mark Abraham
    • [gmx-users] Magic Number Error   alessandro casoni
      • [gmx-users] Magic Number Error   alessandro casoni
      • [gmx-users] Magic Number Error   Mark Abraham
• [gmx-users] a minor bug in g_clustsize   Ran Friedman
• [gmx-users] fix_top_for_charmm.pl problem   sarbani chattopadhyay
  • [gmx-users] fix_top_for_charmm.pl problem   Mark Abraham
• [gmx-users] Softwares for ab initio MD with gromacs   Subhrangshu Supakar
  • [gmx-users] Softwares for ab initio MD with gromacs   Mark Abraham
    • [gmx-users] Softwares for ab initio MD with gromacs   Ran Friedman
• [gmx-users] error with fix_top_for_charmm.pl   sarbani chattopadhyay
  • [gmx-users] error with fix_top_for_charmm.pl   Mark Abraham
• [gmx-users] Skewed box using Parrinello-Rahman pressure coupling   reich at mpikg.mpg.de
  • [gmx-users] Skewed box using Parrinello-Rahman pressure coupling   Berk Hess
• [gmx-users] Weird structure after minimization (membrane protein simulation)   Alok
  • [gmx-users] Weird structure after minimization (membrane protein simulation)   Mark Abraham
• [gmx-users] WARNING concerning lipid.itp   Wissensbund at gmx.net
• [gmx-users] FEP : separating components of dgdl   BON Michael
  • [gmx-users] RE: FEP : separating components of dgdl   Berk Hess
• [gmx-users] Problem regarding Complex ion addition by genbox   chris.neale at utoronto.ca
• [gmx-users] Warning: pressure scaling more than 1%   Wissensbund at gmx.net
• [gmx-users] Skewed box using Parrinello-Rahman pressure coupling   reich at mpikg.mpg.de
• [gmx-users] Checkpointing GROMACS jobs   Steven Kirk
  • [gmx-users] Checkpointing GROMACS jobs   David van der Spoel
• [gmx-users] Weird structure after minimization (membrane protein simulation   Chris Neale
  • [gmx-users] Weird structure after minimization (membrane proteinsimulation   Alok
    • [gmx-users] Weird structure after minimization (membrane proteinsimulation   Mark Abraham
      • [gmx-users] Weird structure after minimization (membrane proteinsimulation   alokjain at iitk.ac.in
      • [gmx-users] Weird structure after minimization (membrane proteinsimulation   alokjain at iitk.ac.in
      • [gmx-users] Weird structure after minimization (membrane proteinsimulation   Mark Abraham
      • [gmx-users] Weird structure after minimization (membrane proteinsimulation   alokjain at iitk.ac.in
  • [gmx-users] Weird structure after minimization (membrane protein simulation   alokjain at iitk.ac.in
  • [gmx-users] Weird structure after minimization (membrane protein simulation   alokjain at iitk.ac.in
• [gmx-users] Can not read/write topologies to file type trr   Martin Höfling
  • [gmx-users] Can not read/write topologies to file type trr   David van der Spoel
    • [gmx-users] Can not read/write topologies to file type trr   Martin Höfling
• [gmx-users] Checkpointing GROMACS jobs   Alan Dodd
• [gmx-users] Checkpointing GROMACS jobs   Chris Neale
• [gmx-users] trouble compiling gromacs-3.3.2 on OS X 10.5.1   Scott Milner
  • [gmx-users] trouble compiling gromacs-3.3.2 on OS X 10.5.1   Mark Abraham
    • [gmx-users] trouble compiling gromacs-3.3.2 on OS X 10.5.1   Scott Milner
      • [gmx-users] trouble compiling gromacs-3.3.2 on OS X 10.5.1   Mark Abraham
  • [gmx-users] trouble compiling gromacs-3.3.2 on OS X 10.5.1   DAVID RINCON
    • [gmx-users] trouble compiling gromacs-3.3.2 on OS X 10.5.1   Scott Milner
• [gmx-users] RE : FEP : separating components of dgdl   BON Michael
  • [gmx-users] RE: RE : FEP : separating components of dgdl   Berk Hess
• [gmx-users] RE : FEP : separating components of dgdl   BON Michael
  • [gmx-users] RE: RE : FEP : separating components of dgdl   Berk Hess
• [gmx-users] gromacs versus amber boxsize   servaas michielssens
  • [gmx-users] gromacs versus amber boxsize   Xavier Periole
• [gmx-users] gromacs versus amber boxsize -correction-   servaas michielssens
  • [gmx-users] gromacs versus amber boxsize -correction-   Xavier Periole
  • [gmx-users] gromacs versus amber boxsize -correction-   Mark Abraham
  • [gmx-users] gromacs versus amber boxsize -correction-   Florian Haberl
• [gmx-users] chloroform - oplsaa   Mauro Puppett
• [gmx-users] torsion potential with 7 parameters   Ángel Piñeiro
  • [gmx-users] torsion potential with 7 parameters   David van der Spoel
    • [gmx-users] torsion potential with 7 parameters   Ran Friedman
• [gmx-users] Turn off the diheral energy   Myunggi Yi
  • [gmx-users] Turn off the diheral energy   Mark Abraham
    • [gmx-users] Turn off the diheral energy   Tsjerk Wassenaar
      • [gmx-users] Turn off the diheral energy   Myunggi Yi
• [gmx-users] chloroform - oplsaa   Chris Neale
• [gmx-users] Temperature without trr   Alan Dodd
  • [gmx-users] Temperature without trr   David van der Spoel
• [gmx-users] Dihedral restraints   Behnoush Zare
  • [gmx-users] Dihedral restraints   Mark Abraham
    • [gmx-users] Dihedral restraints   Behnoush Zare
      • [gmx-users] Dihedral restraints   Justin A. Lemkul
      • [gmx-users] Dihedral restraints   Behnoush Zare
• [gmx-users] dihedral restraints wiki section   Chris Neale
  • [gmx-users] dihedral restraints wiki section   Mark Abraham
• [gmx-users] energy minimization breaks freeze group apart   Patricia Francis-Lyon
  • [gmx-users] energy minimization breaks freeze group apart   Justin A. Lemkul
• [gmx-users] Re: gmx-users Digest, Vol 45, Issue 120   Ángel Piñeiro
  • [gmx-users] Re: gmx-users Digest, Vol 45, Issue 120   David van der Spoel
    • [gmx-users] Re: gmx-users Digest, Vol 45, Issue 120   Mark Abraham
      • [gmx-users] torsion potential with 7 parameters   Ángel Piñeiro
  • [gmx-users] torsion potential with 7 parameters   Ángel Piñeiro
• [gmx-users] membrane protein simulation   pragya chohan
  • [gmx-users] membrane protein simulation   Justin A. Lemkul
  • [gmx-users] membrane protein simulation   Mark Abraham
• [gmx-users] RE: RE : FEP : separating components of dgdl (Berk Hess)   BON Michael
  • [gmx-users] RE: RE : FEP : separating components of dgdl (Berk Hess)   Berk Hess
• [gmx-users] NOE restraints and undefined hydrogen atoms, virtual interaction sites   Louic Vermeer
  • [gmx-users] NOE restraints and undefined hydrogen atoms, virtual interaction sites   Louic Vermeer
    • [gmx-users] NOE restraints and undefined hydrogen atoms, virtual interaction sites   Mark Abraham
      • [gmx-users]query regarding unfolding of protein at higher temperature   sangeeta kundu
      • [gmx-users]query regarding unfolding of protein at higher temperature   Tsjerk Wassenaar
      • [gmx-users] NOE restraints and undefined hydrogen atoms, virtual interaction sites   Louic Vermeer
      • [gmx-users] NOE restraints and undefined hydrogen atoms, virtual interaction sites   Mark Abraham
• [gmx-users] Temperature without trr   Alan Dodd
  • [gmx-users] Temperature without trr   David van der Spoel
• [gmx-users] make_hole error installation   Landry.CHARLIER at unice.fr
  • [gmx-users] make_hole error installation   Steffen Wolf
• [gmx-users] Weird structure after minimization (membrane protein simulation)   chris.neale at utoronto.ca
• [gmx-users] Re: Umbrella Sampling   Ilya Chorny
• [gmx-users] does grompp utilize forces from .trr files   chris.neale at utoronto.ca
• [gmx-users] RE : FEP : separating components of dgdl   BON Michael
  • [gmx-users] RE: RE : FEP : separating components of dgdl   Berk Hess
  • [gmx-users] RE : FEP : separating components of dgdl   Maik Goette
• [gmx-users] Address for the server of a REMD temperature calculator   OZGE ENGIN
  • [gmx-users] Address for the server of a REMD temperature calculator   Carsten Kutzner
• [gmx-users] information for analysis   pragya chohan
  • [gmx-users] information for analysis   Louic Vermeer
  • [gmx-users] information for analysis   Steffen Wolf
• [gmx-users] NOE restraints and undefined hydrogen atoms, virtual interaction sites   chris.neale at utoronto.ca
• [gmx-users] DPhPC structure   Jae Hyun Park

Last message date: Thu Jan 31 23:45:42 CET 2008
Archived on: Thu Nov 14 12:04:10 CET 2013

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