[gmx-users] do_dssp file format

Mark Abraham Mark.Abraham at anu.edu.au
Sat Jan 12 03:34:55 CET 2008

ABEL Stephane 175950 wrote:
> I am back :(
> The procedure i did
> 1) do_dssp -s test-Struc.pdb -f test-Struc.pdb -dt 1 -o ss.xpm
> The menu appears I choose 5 (Main Chain) and I obtained the following message 

> The ddsGGvys is indeed a pdb file with the protein atoms (main chain). But the program seems to run because the prompt did not appear but the ouput ss.xpm is never present. 
> What is the problem ?



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