[gmx-users] do_dssp file format

[Mark Abraham]

ABEL Stephane 175950 wrote:
> I am back :(
> 
> The procedure i did
> 
> 1) do_dssp -s test-Struc.pdb -f test-Struc.pdb -dt 1 -o ss.xpm
> The menu appears I choose 5 (Main Chain) and I obtained the following message 

> The ddsGGvys is indeed a pdb file with the protein atoms (main chain). But the program seems to run because the prompt did not appear but the ouput ss.xpm is never present. 
> 
> What is the problem ?

http://wiki.gromacs.org/index.php/do_dssp

Mark