[gmx-users] ask help for Potential energy curve calculation
Yunan Yan
yayan at chemie.fu-berlin.de
Sat Jan 26 17:31:52 CET 2008
Dear all,
Now I need use GROMACS/CPMD to calculate the potential energy
curve for a molecular solved in liquid. Please see the related
content of the CPMD_inp.tmpl and the output for the details.
$ cat em.mdp
title = AU
cpp = /usr/bin/cpp
constraints = all-bonds
constraint_algorithm= shake
integrator = steep
nsteps = 50
...........................
............................
QMMM = yes
QMmethod = CPMD
QMMMscheme = normal
QMMM-grps = QM
QMbasis = STO-3G
planewavecutoff = 25
qmmmcoul_cutoff = 25
MMlayer_radii = 10 10
MMlayer_updfqs = 1 1
; box for cpmd run in a.u.
qmbox_cpmd = 40.0000 30.0000 30.0000
$ head -7 CPMD_inp.tmpl
&CPMD
INTERFACE GMX PCGFIRST
PCG MINIMIZE
MOLECULE CENTER OFF
OPTIMIZE WAVEFUNCTION
&END
$ cat output.em
THE FOLLOWING OPTIONS ARE MUTUALLY EXCLUSIVE
MOLECULAR DYNAMICS
GEOMETRY OPTIMIZATION
WAVEFUNCTION OPTIMIZATION
KOHN-SHAM ENERGIES
VIBRATIONAL ANALYSIS
PROPERTIES
ORBITAL HARDNESS
ELECTRONIC SPECTRA
DEBUG FORCES
LINEAR RESPONSE
CLASSICAL INTERFACE
PROGRAM STOPS IN SUBROUTINE CONTROL| RUNOPTIONS
Would anyone tell me how I can calculte potential energy
curve with Gromacs/CPMD if the interface GMX and the
OPTIMIZE option cannot be used at the same time?
Thank you so much.
Best regards,
Yun-an
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