shafiey at ibb.ut.ac.ir
Mon Jan 28 08:57:20 CET 2008
Hi dear all
I want to simulate cytochrome c (pdb: 1hrc) using Gromacs simulation
package; but I encountered some problem when trying to construct topology
file. In fact, the program does not detect Met80-Fe link. Apparently, I must
adding Met to Special bonds, but , I did not find the potential for S-Fe
bond in force fields of Gromacs. Here I used
Gromos 96 force field.
Could anyone help me for resolving this?
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