[gmx-users] box size

[Chih-Ying Lin]

Hi

1. in the last row of .gro file, the three number represent the length
of the box on X, Y , and Z directions in nanometer.
Right??


2.  for the editconf command,
editconf  -d   Distance_between_the_solute_and_the_box   bt cubic
Right??



what are the differences between the three number in the .gro file and
the distance in the editconf command ??

Thanks
Lin