[gmx-users] get structures

[David van der Spoel]

shahrbanoo karbalaee wrote:
> Dear all  and Mark
> hi,
> I want  to get structures peptide during MD.(format pdb).how can  I get it?
> 
trjconv
> and the scond question,
> Dear Mark,IF I want to have average structure what do i do?let me  explain it.
> the peptide during MD has many structure.which structue  is insert in
> middle  structures? and then average structure....what is your idea?
g_rmsf
g_cluster

please explore the wiki and the online resources.

-- 
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se