[gmx-users] system contains proteins and DNAs with ffamber99
li.dc06 at gmail.com
Wed Jun 11 09:50:18 CEST 2008
Sometimes,the PDB file contains water molecules which only have the oxygen atom. Can
Gromacs add the hydrogen atoms of the water molecules?
Additionly, when use Gromacs with the force field ffamber99, Can it add the hydrogen
atoms of the DNA? Can I use the force field ffamber99 to simulate the system which contains
proteins and DNAs?
Dechang Li, PhD Candidate
Department of Engineering Mechanics
Email: lidc02 at mails.tsinghua.edu.cn
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