[gmx-users] Data generated by g_sas

Mark Abraham Mark.Abraham at anu.edu.au
Thu Mar 6 00:23:08 CET 2008

mon_sharma at research.iiit.ac.in wrote:
> Hello All,
> This might sound a bit stupid question. But I have no idea about it. So 
> here I am asking it.
> I am using g_sas to calculate the solvent accessible area. But I am not 
> able to understand the values the program is giving out. I am using 
> options -or and -oa to get it plotted per residue and atom.  It 
> generates three columns data per residue-type and atom-type output. 
> First column for Residue# or atom#. I am confused what the second and 
> third columns corresponds to? If anyone can suggest me. There are no 
> legends provided in the xvgr file generated either.

Providing a sample of parts of the output files would be a useful thing 
to do.


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