[gmx-users] configure error (lam-mpi installation)

Andreas Kring akring1729 at gmail.com
Wed Mar 19 11:05:34 CET 2008


Hi all.

I have tried to search the mailing archives and the FAQ, but I could not 
find an answer, so here goes...

I'm using Ubuntu 7.10 and the latest gcc compiler in this distro is 
gcc-4.1.2. Being aware of the warning that the gcc-4.1.x compilers are 
broken, I installed gcc-4.3.0 using the usual configure; make; make 
install procedure. Hence, the 4.3.0 compiler is now installed in /usr/local.

But when I try to install lam-mpi, I get the following error when 
running the configure script (with the command below) from the top 
lam-mpi source directory:

$./configure CC=/usr/local/bin/gcc CPP=/usr/local/bin/cpp 
CXX=/usr/local/bin/g++ CXXLDFLAGS="-L/usr/local/lib" 
LDFLAGS="-L/usr/local/lib" CPPFLAGS="-I/usr/local/include" 
CXXCPP="-I/usr/local/include"

gives

*** C++ Compiler and preprocessor
checking whether we are using the GNU C++ compiler... yes
checking whether /usr/local/bin/g++ accepts -g... yes
checking dependency style of /usr/local/bin/g++... gcc3
checking how to run the C++ preprocessor... -I/usr/local/include
configure: error: C++ preprocessor "-I/usr/local/include" fails sanity check
See `config.log' for more details.


What am I doing wrong?
(config.log file can be seen below for more details)

Kind regards
Andreas



----- config.log ------

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by configure, which was
generated by GNU Autoconf 2.59.  Invocation command line was

   $ ./configure CC=/usr/local/bin/gcc CPP=/usr/local/bin/cpp 
CXX=/usr/local/bin/g++ CXXLDFLAGS=-L/usr/local/lib 
LDFLAGS=-L/usr/local/lib CPPFLAGS=-I/usr/local/include 
CXXCPP=-I/usr/local/include

## --------- ##
## Platform. ##
## --------- ##

hostname = yoda
uname -m = x86_64
uname -r = 2.6.22-14-server
uname -s = Linux
uname -v = #1 SMP Tue Feb 12 03:10:53 UTC 2008

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
hostinfo               = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /usr/games


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1717: checking for a BSD-compatible install
configure:1772: result: /usr/bin/install -c
configure:1783: checking whether build environment is sane
configure:1826: result: yes
configure:1877: checking for gawk
configure:1906: result: no
configure:1877: checking for mawk
configure:1893: found /usr/bin/mawk
configure:1903: result: mawk
configure:1913: checking whether make sets $(MAKE)
configure:1933: result: yes
configure:2122: checking build system type
configure:2140: result: x86_64-unknown-linux-gnu
configure:2168: checking host system type
configure:2182: result: x86_64-unknown-linux-gnu
configure:2204: checking for lamclean
configure:2237: result: no
configure:2682: checking if want debugging output support
configure:2696: result: no
configure:2757: checking for gcc
configure:2783: result: /usr/local/bin/gcc
configure:3027: checking for C compiler version
configure:3030: /usr/local/bin/gcc --version </dev/null >&5
gcc (GCC) 4.3.0
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3033: $? = 0
configure:3035: /usr/local/bin/gcc -v </dev/null >&5
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Configured with: ../gcc-4.3.0/configure
Thread model: posix
gcc version 4.3.0 (GCC)
configure:3038: $? = 0
configure:3040: /usr/local/bin/gcc -V </dev/null >&5
gcc: '-V' option must have argument
configure:3043: $? = 1
configure:3066: checking for C compiler default output file name
configure:3069: /usr/local/bin/gcc  -I/usr/local/include 
-L/usr/local/lib conftest.c  >&5
configure:3072: $? = 0
configure:3118: result: a.out
configure:3123: checking whether the C compiler works
configure:3129: ./a.out
configure:3132: $? = 0
configure:3149: result: yes
configure:3156: checking whether we are cross compiling
configure:3158: result: no
configure:3161: checking for suffix of executables
configure:3163: /usr/local/bin/gcc -o conftest  -I/usr/local/include 
-L/usr/local/lib conftest.c  >&5
configure:3166: $? = 0
configure:3191: result:
configure:3197: checking for suffix of object files
configure:3218: /usr/local/bin/gcc -c  -I/usr/local/include conftest.c >&5
configure:3221: $? = 0
configure:3243: result: o
configure:3247: checking whether we are using the GNU C compiler
configure:3271: /usr/local/bin/gcc -c  -I/usr/local/include conftest.c >&5
configure:3277: $? = 0
configure:3281: test -z
			 || test ! -s conftest.err
configure:3284: $? = 0
configure:3287: test -s conftest.o
configure:3290: $? = 0
configure:3303: result: yes
configure:3309: checking whether /usr/local/bin/gcc accepts -g
configure:3330: /usr/local/bin/gcc -c -g -I/usr/local/include conftest.c >&5
configure:3336: $? = 0
configure:3340: test -z
			 || test ! -s conftest.err
configure:3343: $? = 0
configure:3346: test -s conftest.o
configure:3349: $? = 0
configure:3360: result: yes
configure:3377: checking for /usr/local/bin/gcc option to accept ANSI C
configure:3447: /usr/local/bin/gcc  -c -g -O2 -I/usr/local/include 
conftest.c >&5
configure:3453: $? = 0
configure:3457: test -z
			 || test ! -s conftest.err
configure:3460: $? = 0
configure:3463: test -s conftest.o
configure:3466: $? = 0
configure:3484: result: none needed
configure:3502: /usr/local/bin/gcc -c -g -O2 -I/usr/local/include 
conftest.c >&5
conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' 
before 'me'
configure:3508: $? = 1
configure: failed program was:
| #ifndef __cplusplus
|   choke me
| #endif
configure:3652: checking for style of include used by make
configure:3680: result: GNU
configure:3708: checking dependency style of /usr/local/bin/gcc
configure:3791: result: gcc3
configure:3814: checking how to run the C preprocessor
configure:3932: result: /usr/local/bin/cpp
configure:3956: /usr/local/bin/cpp -I/usr/local/include conftest.c
configure:3962: $? = 0
configure:3994: /usr/local/bin/cpp -I/usr/local/include conftest.c
conftest.c:19:28: error: ac_nonexistent.h: No such file or directory
configure:4000: $? = 1
configure: failed program was:
| /* confdefs.h.  */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LAM_MAJOR_VERSION 7
| #define LAM_MINOR_VERSION 0
| #define LAM_RELEASE_VERSION 6
| #define LAM_ALPHA_VERSION 0
| #define LAM_BETA_VERSION 0
| #define LAM_SVN_VERSION 0
| #define LAM_VERSION "7.0.6"
| #define LAM_DEPENDENCY_PREFIX "NONE"
| #define LAM_ARCH "x86_64-unknown-linux-gnu"
| #define LAM_WANT_DEBUG 0
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:4044: checking for egrep
configure:4054: result: grep -E
configure:4060: checking whether /usr/local/bin/gcc needs -traditional
configure:4102: result: no
configure:4120: checking for AIX
configure:4142: result: no
configure:4152: checking if need special C compiler/linker flags
configure:4185: result: none needed
configure:4347: checking for C optimization flags
configure:4349: result: -O3
configure:4357: checking whether the C compiler (/usr/local/bin/gcc -O3 
) accepts ANSI prototypes
configure:4370: result: yes
configure:4505: checking for type int2
configure:4523: $CPP $CPPFLAGS conftest.c
configure:4533: $? = 0
configure:4542: ...some ugly egrepping...
configure:4552: $? = 1
configure:4571: result: no
configure:4580: checking for type uint2
configure:4598: $CPP $CPPFLAGS conftest.c
configure:4608: $? = 0
configure:4617: ...some ugly egrepping...
configure:4627: $? = 1
configure:4646: result: no
configure:4655: checking for type int4
configure:4673: $CPP $CPPFLAGS conftest.c
configure:4683: $? = 0
configure:4692: ...some ugly egrepping...
configure:4702: $? = 1
configure:4721: result: no
configure:4730: checking for type uint4
configure:4748: $CPP $CPPFLAGS conftest.c
configure:4758: $? = 0
configure:4767: ...some ugly egrepping...
configure:4777: $? = 1
configure:4796: result: no
configure:4805: checking for type int8
configure:4823: $CPP $CPPFLAGS conftest.c
configure:4833: $? = 0
configure:4842: ...some ugly egrepping...
configure:4852: $? = 1
configure:4871: result: no
configure:4880: checking for type uint8
configure:4898: $CPP $CPPFLAGS conftest.c
configure:4908: $? = 0
configure:4917: ...some ugly egrepping...
configure:4927: $? = 1
configure:4946: result: no
configure:4955: checking for type float4
configure:4973: $CPP $CPPFLAGS conftest.c
configure:4983: $? = 0
configure:4992: ...some ugly egrepping...
configure:5002: $? = 1
configure:5021: result: no
configure:5030: checking for type float8
configure:5048: $CPP $CPPFLAGS conftest.c
configure:5058: $? = 0
configure:5067: ...some ugly egrepping...
configure:5077: $? = 1
configure:5096: result: no
configure:5111: checking size of char
configure:5134: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5137: $? = 0
configure:5139: ./conftest
configure:5142: $? = 0
configure:5156: result: 1
configure:5184: checking size of short
configure:5207: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5210: $? = 0
configure:5212: ./conftest
configure:5215: $? = 0
configure:5229: result: 2
configure:5257: checking size of wchar_t
configure:5280: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5283: $? = 0
configure:5285: ./conftest
configure:5288: $? = 0
configure:5302: result: 4
configure:5330: checking size of int
configure:5353: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5356: $? = 0
configure:5358: ./conftest
configure:5361: $? = 0
configure:5375: result: 4
configure:5403: checking size of long
configure:5426: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5429: $? = 0
configure:5431: ./conftest
configure:5434: $? = 0
configure:5448: result: 8
configure:5476: checking size of long long
configure:5499: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5502: $? = 0
configure:5504: ./conftest
configure:5507: $? = 0
configure:5521: result: 8
configure:5549: checking size of float
configure:5572: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5575: $? = 0
configure:5577: ./conftest
configure:5580: $? = 0
configure:5594: result: 4
configure:5622: checking size of double
configure:5645: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5648: $? = 0
configure:5650: ./conftest
configure:5653: $? = 0
configure:5667: result: 8
configure:5695: checking size of long double
configure:5718: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5721: $? = 0
configure:5723: ./conftest
configure:5726: $? = 0
configure:5740: result: 16
configure:5768: checking size of void *
configure:5791: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5794: $? = 0
configure:5796: ./conftest
configure:5799: $? = 0
configure:5813: result: 8
configure:5847: checking alignment of char
configure:5876: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5879: $? = 0
configure:5881: ./conftest
configure:5884: $? = 0
configure:5908: result: 1
configure:5924: checking alignment of short
configure:5953: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:5956: $? = 0
configure:5958: ./conftest
configure:5961: $? = 0
configure:5985: result: 2
configure:6001: checking alignment of wchar_t
configure:6030: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6033: $? = 0
configure:6035: ./conftest
configure:6038: $? = 0
configure:6062: result: 4
configure:6078: checking alignment of int
configure:6107: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6110: $? = 0
configure:6112: ./conftest
configure:6115: $? = 0
configure:6139: result: 4
configure:6155: checking alignment of long
configure:6184: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6187: $? = 0
configure:6189: ./conftest
configure:6192: $? = 0
configure:6216: result: 8
configure:6232: checking alignment of long long
configure:6261: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6264: $? = 0
configure:6266: ./conftest
configure:6269: $? = 0
configure:6293: result: 8
configure:6309: checking alignment of float
configure:6338: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6341: $? = 0
configure:6343: ./conftest
configure:6346: $? = 0
configure:6370: result: 4
configure:6386: checking alignment of double
configure:6415: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6418: $? = 0
configure:6420: ./conftest
configure:6423: $? = 0
configure:6447: result: 8
configure:6463: checking alignment of long double
configure:6492: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6495: $? = 0
configure:6497: ./conftest
configure:6500: $? = 0
configure:6524: result: 16
configure:6540: checking alignment of void *
configure:6569: /usr/local/bin/gcc -o conftest -O3  -I/usr/local/include 
-DLAM_BUILDING=1 -L/usr/local/lib conftest.c  >&5
configure:6572: $? = 0
configure:6574: ./conftest
configure:6577: $? = 0
configure:6601: result: 8
configure:6715: checking for C++ compiler version
configure:6718: /usr/local/bin/g++ --version </dev/null >&5
g++ (GCC) 4.3.0
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:6721: $? = 0
configure:6723: /usr/local/bin/g++ -v </dev/null >&5
Using built-in specs.
Target: x86_64-unknown-linux-gnu
Configured with: ../gcc-4.3.0/configure
Thread model: posix
gcc version 4.3.0 (GCC)
configure:6726: $? = 0
configure:6728: /usr/local/bin/g++ -V </dev/null >&5
g++: '-V' option must have argument
configure:6731: $? = 1
configure:6734: checking whether we are using the GNU C++ compiler
configure:6758: /usr/local/bin/g++ -c  -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
configure:6764: $? = 0
configure:6768: test -z
			 || test ! -s conftest.err
configure:6771: $? = 0
configure:6774: test -s conftest.o
configure:6777: $? = 0
configure:6790: result: yes
configure:6796: checking whether /usr/local/bin/g++ accepts -g
configure:6817: /usr/local/bin/g++ -c -g -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
configure:6823: $? = 0
configure:6827: test -z
			 || test ! -s conftest.err
configure:6830: $? = 0
configure:6833: test -s conftest.o
configure:6836: $? = 0
configure:6847: result: yes
configure:6889: /usr/local/bin/g++ -c -g -O2 -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
configure:6895: $? = 0
configure:6899: test -z
			 || test ! -s conftest.err
configure:6902: $? = 0
configure:6905: test -s conftest.o
configure:6908: $? = 0
configure:6934: /usr/local/bin/g++ -c -g -O2 -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
conftest.cc: In function 'int main()':
conftest.cc:53: error: 'exit' was not declared in this scope
configure:6940: $? = 1
configure: failed program was:
| /* confdefs.h.  */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LAM_MAJOR_VERSION 7
| #define LAM_MINOR_VERSION 0
| #define LAM_RELEASE_VERSION 6
| #define LAM_ALPHA_VERSION 0
| #define LAM_BETA_VERSION 0
| #define LAM_SVN_VERSION 0
| #define LAM_VERSION "7.0.6"
| #define LAM_DEPENDENCY_PREFIX "NONE"
| #define LAM_ARCH "x86_64-unknown-linux-gnu"
| #define LAM_WANT_DEBUG 0
| #define LAM_CC "/usr/local/bin/gcc"
| #define LAM_CONFIG_FORCE_PROTOS 1
| #define LAM_HAVE_int2 0
| #define LAM_HAVE_uint2 0
| #define LAM_HAVE_int4 0
| #define LAM_HAVE_uint4 0
| #define LAM_HAVE_int8 0
| #define LAM_HAVE_uint8 0
| #define LAM_HAVE_float4 0
| #define LAM_HAVE_float8 0
| #define LAM_SIZEOF_CHAR 1
| #define LAM_SIZEOF_SHORT 2
| #define LAM_SIZEOF_WCHAR 4
| #define LAM_SIZEOF_INT 4
| #define LAM_SIZEOF_LONG 8
| #define LAM_SIZEOF_LONG_LONG 8
| #define LAM_SIZEOF_FLOAT 4
| #define LAM_SIZEOF_DOUBLE 8
| #define LAM_SIZEOF_LONG_DOUBLE 16
| #define LAM_SIZEOF_VOID_P 8
| #define LAM_ALIGNMENT_CHAR 1
| #define LAM_ALIGNMENT_SHORT 2
| #define LAM_ALIGNMENT_WCHAR 4
| #define LAM_ALIGNMENT_INT 4
| #define LAM_ALIGNMENT_LONG 8
| #define LAM_ALIGNMENT_LONG_LONG 8
| #define LAM_ALIGNMENT_FLOAT 4
| #define LAM_ALIGNMENT_DOUBLE 8
| #define LAM_ALIGNMENT_LONG_DOUBLE 16
| #define LAM_ALIGNMENT_VOID_P 8
| /* end confdefs.h.  */
|
| int
| main ()
| {
| exit (42);
|   ;
|   return 0;
| }
configure:6889: /usr/local/bin/g++ -c -g -O2 -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
conftest.cc:49: error: 'void std::exit(int)' should have been declared 
inside 'std'
configure:6895: $? = 1
configure: failed program was:
| /* confdefs.h.  */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LAM_MAJOR_VERSION 7
| #define LAM_MINOR_VERSION 0
| #define LAM_RELEASE_VERSION 6
| #define LAM_ALPHA_VERSION 0
| #define LAM_BETA_VERSION 0
| #define LAM_SVN_VERSION 0
| #define LAM_VERSION "7.0.6"
| #define LAM_DEPENDENCY_PREFIX "NONE"
| #define LAM_ARCH "x86_64-unknown-linux-gnu"
| #define LAM_WANT_DEBUG 0
| #define LAM_CC "/usr/local/bin/gcc"
| #define LAM_CONFIG_FORCE_PROTOS 1
| #define LAM_HAVE_int2 0
| #define LAM_HAVE_uint2 0
| #define LAM_HAVE_int4 0
| #define LAM_HAVE_uint4 0
| #define LAM_HAVE_int8 0
| #define LAM_HAVE_uint8 0
| #define LAM_HAVE_float4 0
| #define LAM_HAVE_float8 0
| #define LAM_SIZEOF_CHAR 1
| #define LAM_SIZEOF_SHORT 2
| #define LAM_SIZEOF_WCHAR 4
| #define LAM_SIZEOF_INT 4
| #define LAM_SIZEOF_LONG 8
| #define LAM_SIZEOF_LONG_LONG 8
| #define LAM_SIZEOF_FLOAT 4
| #define LAM_SIZEOF_DOUBLE 8
| #define LAM_SIZEOF_LONG_DOUBLE 16
| #define LAM_SIZEOF_VOID_P 8
| #define LAM_ALIGNMENT_CHAR 1
| #define LAM_ALIGNMENT_SHORT 2
| #define LAM_ALIGNMENT_WCHAR 4
| #define LAM_ALIGNMENT_INT 4
| #define LAM_ALIGNMENT_LONG 8
| #define LAM_ALIGNMENT_LONG_LONG 8
| #define LAM_ALIGNMENT_FLOAT 4
| #define LAM_ALIGNMENT_DOUBLE 8
| #define LAM_ALIGNMENT_LONG_DOUBLE 16
| #define LAM_ALIGNMENT_VOID_P 8
| /* end confdefs.h.  */
| extern "C" void std::exit (int) throw (); using std::exit;
| #include <stdlib.h>
| int
| main ()
| {
| exit (42);
|   ;
|   return 0;
| }
configure:6889: /usr/local/bin/g++ -c -g -O2 -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
conftest.cc:49: error: 'void std::exit(int)' should have been declared 
inside 'std'
In file included from conftest.cc:50:
/usr/include/stdlib.h:646: error: declaration of 'void std::exit(int) 
throw ()' throws different exceptions
conftest.cc:49: error: from previous declaration 'void std::exit(int)'
configure:6895: $? = 1
configure: failed program was:
| /* confdefs.h.  */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LAM_MAJOR_VERSION 7
| #define LAM_MINOR_VERSION 0
| #define LAM_RELEASE_VERSION 6
| #define LAM_ALPHA_VERSION 0
| #define LAM_BETA_VERSION 0
| #define LAM_SVN_VERSION 0
| #define LAM_VERSION "7.0.6"
| #define LAM_DEPENDENCY_PREFIX "NONE"
| #define LAM_ARCH "x86_64-unknown-linux-gnu"
| #define LAM_WANT_DEBUG 0
| #define LAM_CC "/usr/local/bin/gcc"
| #define LAM_CONFIG_FORCE_PROTOS 1
| #define LAM_HAVE_int2 0
| #define LAM_HAVE_uint2 0
| #define LAM_HAVE_int4 0
| #define LAM_HAVE_uint4 0
| #define LAM_HAVE_int8 0
| #define LAM_HAVE_uint8 0
| #define LAM_HAVE_float4 0
| #define LAM_HAVE_float8 0
| #define LAM_SIZEOF_CHAR 1
| #define LAM_SIZEOF_SHORT 2
| #define LAM_SIZEOF_WCHAR 4
| #define LAM_SIZEOF_INT 4
| #define LAM_SIZEOF_LONG 8
| #define LAM_SIZEOF_LONG_LONG 8
| #define LAM_SIZEOF_FLOAT 4
| #define LAM_SIZEOF_DOUBLE 8
| #define LAM_SIZEOF_LONG_DOUBLE 16
| #define LAM_SIZEOF_VOID_P 8
| #define LAM_ALIGNMENT_CHAR 1
| #define LAM_ALIGNMENT_SHORT 2
| #define LAM_ALIGNMENT_WCHAR 4
| #define LAM_ALIGNMENT_INT 4
| #define LAM_ALIGNMENT_LONG 8
| #define LAM_ALIGNMENT_LONG_LONG 8
| #define LAM_ALIGNMENT_FLOAT 4
| #define LAM_ALIGNMENT_DOUBLE 8
| #define LAM_ALIGNMENT_LONG_DOUBLE 16
| #define LAM_ALIGNMENT_VOID_P 8
| /* end confdefs.h.  */
| extern "C" void std::exit (int); using std::exit;
| #include <stdlib.h>
| int
| main ()
| {
| exit (42);
|   ;
|   return 0;
| }
configure:6889: /usr/local/bin/g++ -c -g -O2 -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
configure:6895: $? = 0
configure:6899: test -z
			 || test ! -s conftest.err
configure:6902: $? = 0
configure:6905: test -s conftest.o
configure:6908: $? = 0
configure:6934: /usr/local/bin/g++ -c -g -O2 -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc >&5
configure:6940: $? = 0
configure:6944: test -z
			 || test ! -s conftest.err
configure:6947: $? = 0
configure:6950: test -s conftest.o
configure:6953: $? = 0
configure:6978: checking dependency style of /usr/local/bin/g++
configure:7061: result: gcc3
configure:7083: checking how to run the C++ preprocessor
configure:7197: result: -I/usr/local/include
configure:7221: -I/usr/local/include -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc
./configure: line 7222: -I/usr/local/include: No such file or directory
configure:7227: $? = 127
configure: failed program was:
| /* confdefs.h.  */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LAM_MAJOR_VERSION 7
| #define LAM_MINOR_VERSION 0
| #define LAM_RELEASE_VERSION 6
| #define LAM_ALPHA_VERSION 0
| #define LAM_BETA_VERSION 0
| #define LAM_SVN_VERSION 0
| #define LAM_VERSION "7.0.6"
| #define LAM_DEPENDENCY_PREFIX "NONE"
| #define LAM_ARCH "x86_64-unknown-linux-gnu"
| #define LAM_WANT_DEBUG 0
| #define LAM_CC "/usr/local/bin/gcc"
| #define LAM_CONFIG_FORCE_PROTOS 1
| #define LAM_HAVE_int2 0
| #define LAM_HAVE_uint2 0
| #define LAM_HAVE_int4 0
| #define LAM_HAVE_uint4 0
| #define LAM_HAVE_int8 0
| #define LAM_HAVE_uint8 0
| #define LAM_HAVE_float4 0
| #define LAM_HAVE_float8 0
| #define LAM_SIZEOF_CHAR 1
| #define LAM_SIZEOF_SHORT 2
| #define LAM_SIZEOF_WCHAR 4
| #define LAM_SIZEOF_INT 4
| #define LAM_SIZEOF_LONG 8
| #define LAM_SIZEOF_LONG_LONG 8
| #define LAM_SIZEOF_FLOAT 4
| #define LAM_SIZEOF_DOUBLE 8
| #define LAM_SIZEOF_LONG_DOUBLE 16
| #define LAM_SIZEOF_VOID_P 8
| #define LAM_ALIGNMENT_CHAR 1
| #define LAM_ALIGNMENT_SHORT 2
| #define LAM_ALIGNMENT_WCHAR 4
| #define LAM_ALIGNMENT_INT 4
| #define LAM_ALIGNMENT_LONG 8
| #define LAM_ALIGNMENT_LONG_LONG 8
| #define LAM_ALIGNMENT_FLOAT 4
| #define LAM_ALIGNMENT_DOUBLE 8
| #define LAM_ALIGNMENT_LONG_DOUBLE 16
| #define LAM_ALIGNMENT_VOID_P 8
| #ifdef __cplusplus
| extern "C" void exit (int) throw ();
| #endif
| /* end confdefs.h.  */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 		     Syntax error
configure:7221: -I/usr/local/include -I/usr/local/include 
-DLAM_BUILDING=1 conftest.cc
./configure: line 7222: -I/usr/local/include: No such file or directory
configure:7227: $? = 127
configure: failed program was:
| /* confdefs.h.  */
|
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LAM_MAJOR_VERSION 7
| #define LAM_MINOR_VERSION 0
| #define LAM_RELEASE_VERSION 6
| #define LAM_ALPHA_VERSION 0
| #define LAM_BETA_VERSION 0
| #define LAM_SVN_VERSION 0
| #define LAM_VERSION "7.0.6"
| #define LAM_DEPENDENCY_PREFIX "NONE"
| #define LAM_ARCH "x86_64-unknown-linux-gnu"
| #define LAM_WANT_DEBUG 0
| #define LAM_CC "/usr/local/bin/gcc"
| #define LAM_CONFIG_FORCE_PROTOS 1
| #define LAM_HAVE_int2 0
| #define LAM_HAVE_uint2 0
| #define LAM_HAVE_int4 0
| #define LAM_HAVE_uint4 0
| #define LAM_HAVE_int8 0
| #define LAM_HAVE_uint8 0
| #define LAM_HAVE_float4 0
| #define LAM_HAVE_float8 0
| #define LAM_SIZEOF_CHAR 1
| #define LAM_SIZEOF_SHORT 2
| #define LAM_SIZEOF_WCHAR 4
| #define LAM_SIZEOF_INT 4
| #define LAM_SIZEOF_LONG 8
| #define LAM_SIZEOF_LONG_LONG 8
| #define LAM_SIZEOF_FLOAT 4
| #define LAM_SIZEOF_DOUBLE 8
| #define LAM_SIZEOF_LONG_DOUBLE 16
| #define LAM_SIZEOF_VOID_P 8
| #define LAM_ALIGNMENT_CHAR 1
| #define LAM_ALIGNMENT_SHORT 2
| #define LAM_ALIGNMENT_WCHAR 4
| #define LAM_ALIGNMENT_INT 4
| #define LAM_ALIGNMENT_LONG 8
| #define LAM_ALIGNMENT_LONG_LONG 8
| #define LAM_ALIGNMENT_FLOAT 4
| #define LAM_ALIGNMENT_DOUBLE 8
| #define LAM_ALIGNMENT_LONG_DOUBLE 16
| #define LAM_ALIGNMENT_VOID_P 8
| #ifdef __cplusplus
| extern "C" void exit (int) throw ();
| #endif
| /* end confdefs.h.  */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
| 		     Syntax error
configure:7296: error: C++ preprocessor "-I/usr/local/include" fails 
sanity check
See `config.log' for more details.

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_build_alias=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CC_set=set
ac_cv_env_CC_value=/usr/local/bin/gcc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=set
ac_cv_env_CPPFLAGS_value=-I/usr/local/include
ac_cv_env_CPP_set=set
ac_cv_env_CPP_value=/usr/local/bin/cpp
ac_cv_env_CXXCPP_set=set
ac_cv_env_CXXCPP_value=-I/usr/local/include
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXXLDFLAGS_set=set
ac_cv_env_CXXLDFLAGS_value=-L/usr/local/lib
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=/usr/local/bin/g++
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value=-L/usr/local/lib
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_host_alias=x86_64-unknown-linux-gnu
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP=/usr/local/bin/cpp
ac_cv_prog_CXXCPP=-I/usr/local/include
ac_cv_prog_ac_ct_CC=/usr/local/bin/gcc
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_cxx_g=yes
ac_cv_prog_egrep='grep -E'
ac_cv_prog_gcc_traditional=no
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /home/andreas/download/lam-7.0.6/config/missing --run 
aclocal-1.8'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/andreas/download/lam-7.0.6/config/missing --run tar'
AR=''
AUTOCONF='${SHELL} /home/andreas/download/lam-7.0.6/config/missing --run 
autoconf'
AUTOHEADER='${SHELL} /home/andreas/download/lam-7.0.6/config/missing 
--run autoheader'
AUTOMAKE='${SHELL} /home/andreas/download/lam-7.0.6/config/missing --run 
automake-1.8'
AWK='mawk'
CASE_SENSITIVE_FS_FALSE=''
CASE_SENSITIVE_FS_TRUE=''
CC='/usr/local/bin/gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-O3 '
CFLAGS_WITHOUT_OPTFLAGS=''
CLEANFILES='*~'
CP=''
CPP='/usr/local/bin/cpp'
CPPFLAGS='-I/usr/local/include -DLAM_BUILDING=1'
CXX='/usr/local/bin/g++'
CXXCPP='-I/usr/local/include'
CXXCPPFLAGS=''
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-g -O2'
CXXLDFLAGS='-L/usr/local/lib'
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
ECHO='echo'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='grep -E'
EXEEXT=''
F77=''
F77_BUILD_DIR=''
F77_LTPLIB=''
FC=''
FFLAGS=''
IMPID_DIR=''
IMPI_DIR=''
IMPI_LIB=''
IMPI_OBJS=''
IMPI_SERVER=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='${SHELL} $(install_sh) -c -s'
LAM_ALPHA_VERSION='0'
LAM_BETA_VERSION='0'
LAM_BINDIR='/usr/local/bin'
LAM_CONFIGURE_DATE='Wed Mar 19 11:01:43 CET 2008'
LAM_CONFIGURE_HOST='yoda'
LAM_CONFIGURE_USER='root'
LAM_CXX_TEMPLATE_REPOSITORY=''
LAM_EXEC_PREFIX='/usr/local'
LAM_MAJOR_VERSION='7'
LAM_MANDIR='/usr/local/man'
LAM_MINOR_VERSION='0'
LAM_PREFIX='/usr/local'
LAM_RELEASE_VERSION='6'
LAM_SSI_boot_LTLIBS=''
LAM_SSI_boot_SUBDIRS=''
LAM_SSI_coll_LTLIBS=''
LAM_SSI_coll_SUBDIRS=''
LAM_SSI_crlam_LTLIBS=''
LAM_SSI_crlam_SUBDIRS=''
LAM_SSI_crmpi_LTLIBS=''
LAM_SSI_crmpi_SUBDIRS=''
LAM_SSI_rpi_LTLIBS=''
LAM_SSI_rpi_SUBDIRS=''
LAM_SVN_VERSION='0'
LAM_TOP_BUILDDIR=''
LAM_VERSION='7.0.6'
LAM_WANT_INSTALL_MPIEXEC_FALSE=''
LAM_WANT_INSTALL_MPIEXEC_TRUE=''
LDFLAGS='-L/usr/local/lib'
LIBLAM_EXTRA_LDFLAGS=''
LIBLAM_EXTRA_LIBS=''
LIBMPI_EXTRA_LDFLAGS=''
LIBMPI_EXTRA_LIBS=''
LIBOBJS=''
LIBS=''
LIBTOOL=''
LN_S=''
LTLIBOBJS=''
MAKEINFO='${SHELL} /home/andreas/download/lam-7.0.6/config/missing --run 
makeinfo'
OBJEXT='o'
PACKAGE='lam'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
RANLIB=''
RM=''
ROMIO_ARCH_FLAGS=''
ROMIO_USER_FLAGS=''
SET_MAKE=''
SHELL='/bin/bash'
SHELL_CMD=''
STRIP=''
TOTALVIEW_DEBUG_FLAGS=''
TOTALVIEW_DLL_DIR=''
VERSION='7.0.6'
WANT_CPPFILE_FALSE=''
WANT_CPPFILE_TRUE=''
WANT_FORTRAN_FALSE=''
WANT_FORTRAN_TRUE=''
WANT_IMPI_BUILD_FALSE=''
WANT_IMPI_BUILD_TRUE=''
WANT_MPI2CPP_FALSE=''
WANT_MPI2CPP_TRUE=''
WANT_MPI_STUBS_FALSE=''
WANT_MPI_STUBS_TRUE=''
WANT_PREFIX_MEMCPY_FALSE=''
WANT_PREFIX_MEMCPY_TRUE=''
WANT_PROFILE_BUILD_FALSE=''
WANT_PROFILE_BUILD_TRUE=''
WANT_ROMIO_FALSE=''
WANT_ROMIO_TRUE=''
WANT_TRILLIUM_INSTALL_FALSE=''
WANT_TRILLIUM_INSTALL_TRUE=''
WRAPPER_EXTRA_CFLAGS=''
WRAPPER_EXTRA_CXXFLAGS=''
WRAPPER_EXTRA_FFLAGS=''
WRAPPER_EXTRA_LDFLAGS=''
WRAPPER_EXTRA_LIBS=''
ac_ct_AR=''
ac_ct_CC='/usr/local/bin/gcc'
ac_ct_CXX=''
ac_ct_F77=''
ac_ct_RANLIB=''
ac_ct_STRIP=''
ac_prefix_program=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__leading_dot='.'
am__quote=''
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${prefix}/share'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
includedir='${prefix}/include'
infodir='${prefix}/info'
install_sh='/home/andreas/download/lam-7.0.6/config/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
mkdir_p='mkdir -m 0755 -p --'
oldincludedir='/usr/include'
prefix='NONE'
program_transform_name='s,x,x,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define LAM_ALIGNMENT_CHAR 1
#define LAM_ALIGNMENT_DOUBLE 8
#define LAM_ALIGNMENT_FLOAT 4
#define LAM_ALIGNMENT_INT 4
#define LAM_ALIGNMENT_LONG 8
#define LAM_ALIGNMENT_LONG_DOUBLE 16
#define LAM_ALIGNMENT_LONG_LONG 8
#define LAM_ALIGNMENT_SHORT 2
#define LAM_ALIGNMENT_VOID_P 8
#define LAM_ALIGNMENT_WCHAR 4
#define LAM_ALPHA_VERSION 0
#define LAM_ARCH "x86_64-unknown-linux-gnu"
#define LAM_BETA_VERSION 0
#define LAM_CC "/usr/local/bin/gcc"
#define LAM_CONFIG_FORCE_PROTOS 1
#define LAM_DEPENDENCY_PREFIX "NONE"
#define LAM_HAVE_float4 0
#define LAM_HAVE_float8 0
#define LAM_HAVE_int2 0
#define LAM_HAVE_int4 0
#define LAM_HAVE_int8 0
#define LAM_HAVE_uint2 0
#define LAM_HAVE_uint4 0
#define LAM_HAVE_uint8 0
#define LAM_MAJOR_VERSION 7
#define LAM_MINOR_VERSION 0
#define LAM_RELEASE_VERSION 6
#define LAM_SIZEOF_CHAR 1
#define LAM_SIZEOF_DOUBLE 8
#define LAM_SIZEOF_FLOAT 4
#define LAM_SIZEOF_INT 4
#define LAM_SIZEOF_LONG 8
#define LAM_SIZEOF_LONG_DOUBLE 16
#define LAM_SIZEOF_LONG_LONG 8
#define LAM_SIZEOF_SHORT 2
#define LAM_SIZEOF_VOID_P 8
#define LAM_SIZEOF_WCHAR 4
#define LAM_SVN_VERSION 0
#define LAM_VERSION "7.0.6"
#define LAM_WANT_DEBUG 0
#define PACKAGE_BUGREPORT ""
#define PACKAGE_NAME ""
#define PACKAGE_STRING ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#endif
#ifdef __cplusplus
extern "C" void exit (int) throw ();

configure: exit 1



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