[gmx-users] using xmp file

[pragya chohan]

Hi 
i found out the residues which form H bond but am still not able to get life time if H bond. The option -lifetime gives t as x and p(t) as y axis. is this value for all the bonds. 
How can i see the lifetime of each bond?
 
Thanking you
 
pragya chohan
> Date: Sat, 3 May 2008 02:06:52 +0200> From: dommert at fias.uni-frankfurt.de> To: gmx-users at gromacs.org> Subject: Re: [gmx-users] using xmp file> > Mark Abraham wrote:> > pragya chohan wrote:> >> Dear users> >> > >> I wasted to look at H bonding between between a particular residue> >> and rest of the system. So I did g_hbond. It created a number of> >> files I want to make a table indicating atom of residue> >> participating, atom or residue number of Donor atom, lifetime of> >> those bonds to show their significance.> >> > >> Can you tell me which files are useful for this purpose? > >> > Yes, but first you should be reading "g_hbond -h" and working some> > things out for yourself.> >> >> Also please tell me how to visualise xmp files on windows>> >> > Google is probably your friend for finding out about viewers for *xpm*> > files. The GIMP will certainly work, but it's a heavyweight solution!> >> Perhaps the xpm2ps tool will also help to view a ps document, which> should be possible with windows ;)> > > > Mark> > _______________________________________________> > gmx-users mailing list gmx-users at gromacs.org> > http://www.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/search before> > posting!> > Please don't post (un)subscribe requests to the list. Use the www> > interface or send it to gmx-users-request at gromacs.org.> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php> >> > > -- > Florian Dommert> Dipl.-Phys.> > Computational and Theoretical Softmatter & Biophysics group> > Frankfurt Institute for Advanced Studies> Johann-Wolfgang-Goethe University> > Ruth-Moufang-Str. 1> 60438 Frankfurt am Main> > Phone: +49(0)69 / 798 - 47522> Fax: +49(0)69 / 798 - 47611> > EMail: dommert at fias.uni-frankfurt.de> Home: http://fias.uni-frankfurt.de/~simbio/Florian_Dommert> 
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