[gmx-users] how to edit pdb file

[Wei, Xiupeng]

Hi Justin,
           This command is just what I wanted. Thanks a lot.
Hi Yang,Andrea and Alan,
          Thanks for your help. The link for PDB format is very useful.And I think Xemacs will be helpful for future use.

Best regards,
xiupeng
________________________________________
From: gmx-users-bounces at gromacs.org [gmx-users-bounces at gromacs.org] On Behalf Of Justin A. Lemkul [jalemkul at vt.edu]
Sent: Wednesday, May 21, 2008 9:50 AM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] how to edit pdb file

Quoting "Wei, Xiupeng" <xiupeng-wei at uiowa.edu>:

> Dear GMX users,
>          I have a basic question. I want to put two same box in x direction.
> So I need increase the number of atoms and change their x coordinates,then
> combine it with the original one. But the file created by Excel can't be
> recoganized by gromacs. Is there any method in Gromacs to handle that? I also
> used Matlab, but it can't read pdb file correctly. Thanks.

genconf -nbox 2 1 1

>
> Best regards,
> xiupeng
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>



========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul at vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/

========================================
_______________________________________________
gmx-users mailing list    gmx-users at gromacs.org
http://www.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at http://www.gromacs.org/search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-request at gromacs.org.
Can't post? Read http://www.gromacs.org/mailing_lists/users.php