[gmx-users] how to edit pdb file

[Alan Dodd]

Copy file, editconf to translate, then concatenate that with the original, reorder and renumber everything; or genbox will also do something similar with less tinkering.

----- Original Message ----
From: "Wei, Xiupeng" <xiupeng-wei at uiowa.edu>
To: "gmx-users at gromacs.org" <gmx-users at gromacs.org>
Sent: Wednesday, May 21, 2008 3:24:46 PM
Subject: [gmx-users] how to edit pdb file

Dear GMX users,
         I have a basic question. I want to put two same box in x direction. So I need increase the number of atoms and change their x coordinates,then combine it with the original one. But the file created by Excel can't be recoganized by gromacs. Is there any method in Gromacs to handle that? I also used Matlab, but it can't read pdb file correctly. Thanks.

Best regards,
xiupeng
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