[gmx-users] Normal mode analysis

Polavarapu, Abhigna polavara at indiana.edu
Thu Nov 13 23:37:39 CET 2008

Hi All,
         I am doing normal mode analysis. After getting the eigen frequencies, is there a way we can visualize the vibrational modes in gromacs. And even how to know which frequency corresponds to which mode of vibration. I saw that IED is used to visualize normal modes by integrating it with VMD. But I installed VMD on my windows machine. So I dont think there is a way to install IED on windows. Please let me if there are any softwares which can visualize normal modes if so, how to get them?

Thank you

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