[gmx-users] RE: Normal mode analysis

Marudachalam S msundaram at ncbs.res.in
Thu Nov 20 05:24:04 CET 2008


I don't know what exactly you are looking for, but normal modes can be
visualized by freewares like Chemcraft, Molekel, etc. Hope it helps.

Marudachalam.

>
> ________________________________________
>
> Hi All,
>          I am doing normal mode analysis. After getting the eigen
> frequencies, is there a way we can visualize the vibrational
> modes in gromacs. And even how to know which frequency
> corresponds to which mode of vibration. I saw that IED is used to
> visualize normal modes by integrating it with VMD. But I
> installed VMD on my windows machine. So I dont think there is a
> way to install IED on windows. Please let me if there are any
> softwares which can visualize normal modes if so, how to get
> them?
>
> Thank you
> abhigna
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>




More information about the gromacs.org_gmx-users mailing list