[gmx-users] RE: Normal mode analysis

[Marudachalam S]

I don't know what exactly you are looking for, but normal modes can be
visualized by freewares like Chemcraft, Molekel, etc. Hope it helps.

Marudachalam.

>
> ________________________________________
>
> Hi All,
>          I am doing normal mode analysis. After getting the eigen
> frequencies, is there a way we can visualize the vibrational
> modes in gromacs. And even how to know which frequency
> corresponds to which mode of vibration. I saw that IED is used to
> visualize normal modes by integrating it with VMD. But I
> installed VMD on my windows machine. So I dont think there is a
> way to install IED on windows. Please let me if there are any
> softwares which can visualize normal modes if so, how to get
> them?
>
> Thank you
> abhigna
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