[gmx-users] Re: how to show dodecahedron box in VMD

Tsjerk Wassenaar tsjerkw at gmail.com
Wed Nov 26 11:08:56 CET 2008


Can't help you with VMD, but I do have a script to take care of this in Pymol.



On 11/25/08, xianghong qi <xianghong001 at gmail.com> wrote:
> Dear all:
> I am trying to show the dodecahedron box only in vmd since my simulation box
> is dodecahedron.  If I include water, I can see the box is dodecahedron. But
> I want to get rid off all of water, then my box will not appear there. How
> can I keep the dodecahedron box boundaries and solute only? Looks like only
> the rectangular box boundaries can be drawn  in VMD.
>  Does anyone has some suggestions? Appreciate your great help.
> Happy Thanksgiving.
> -Xianghong Qi
> --
> Some people make the world more special just by being in it.
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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