[gmx-users] trjcat

[rams rams]

Dear Justin and Xavier,

Thanks for the suggestions.

Ram.

On Tue, Oct 7, 2008 at 11:45 AM, Xavier Periole <X.Periole at rug.nl> wrote:

> On Tue, 7 Oct 2008 11:39:45 -0400
>  "rams rams" <rams.crux at gmail.com> wrote:
>
>> Dear Users,
>>
>> I tried to create a trajectory file from a set of pdb files (infact
>> several
>> of them) starting from time frame 0 to lets say 100 with an interval of
>> 1ps
>> each. If I use the following command,
>>
>> trjconv -f  0.xtc 1.xtc ......100.xtc -o .xtc
>>
>> its resuling only one frame (I think its not stiching them).
>>
>> If I use "-settime" along with the above command, it is stiching all the
>> frames, but its asking for the start time for each frame. Its really
>> difficult to mention the start times for several hundred frames. Is there
>> any way we can handle this.
>>
> generate a file let say toto containing:
> 1
> 2
> 3
> 4
> 5
> 6
> ...
> 100
>
> and then run trjcat -f ... -settime < toto
>
>>
>> Thanks.
>> Ram.
>>
>
> -----------------------------------------------------
> XAvier Periole - PhD
>
> - Molecular Dynamics Group -
> NMR and Computation
> University of Groningen
> The Netherlands
>
> -----------------------------------------------------
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the www interface
> or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20081007/7fefcee2/attachment.html>