[gmx-users] A matter on outputting trajectory of gromacs 4.0

G.H. Zuo ghong.zuo at gmail.com
Wed Oct 15 14:25:55 CEST 2008


Dear Gromacs Users

I download the new gromacs 4.0 and do some tests on protein folding.
It seem that there is a matter on outputting trajectory in this version.
When the protein is at the boundary of the box, the mdrun will output the
protein in some segments.  This matter had never found in the preview
versions.  And It seem that the program trjconv can't correct this matter.
Is there someone having ideas about this?

thanks

Guanghong
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