[gmx-users] mdrun doesn't run in version 4.0 on sgi server

Lee Soin nomadoro at gmail.com
Sun Oct 26 04:22:57 CET 2008


Hello!
I'm using gromacs 4.0 on an sgi server. Everything compiled OK. Every
program in gromacs runs OK, except mdrun. Mdrun stops every time at this
point:

Loaded with Money
starting mdrun 'IMMUNOGLOBULIN G BINDING PROTEIN G in water'
100000 steps,    200.0 ps.

Then nothing happens.The CPU usage is 0%, and the .trr and .xtc files remain
0 bytes. What is the problem?

-- 
Sun Li
Department of Physics
Nanjing University, China
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