[gmx-users] mdrun doesn't run in version 4.0 on sgi server

Mark Abraham Mark.Abraham at anu.edu.au
Sun Oct 26 06:34:33 CET 2008

Lee Soin wrote:
> Hello!
> I'm using gromacs 4.0 on an sgi server. Everything compiled OK. Every 
> program in gromacs runs OK, except mdrun. Mdrun stops every time at this 
> point:
> Loaded with Money
> starting mdrun 'IMMUNOGLOBULIN G BINDING PROTEIN G in water'
> 100000 steps,    200.0 ps.
> Then nothing happens.The CPU usage is 0%, and the .trr and .xtc files 
> remain 0 bytes. What is the problem?

What does the log file say? Are you running in parallel? If so, how? Do 
other parallel codes work?


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