[gmx-users] Visualizing g_sdf on a Mac
matt.wyczalkowski at gmail.com
Wed Sep 3 19:56:00 CEST 2008
Thanks for the help. Here is what I learned...
Yes, VMD is able to render the PLT format using the PLT Plugin:
Download the plugins at the bottom of this page:
Doctoral Candidate, Biomedical Engineering
Pappu Lab: http://lima.wustl.edu
Washington University in St. Louis
On Tue, Sep 2, 2008 at 8:58 PM, Florian Dommert
<dommert at fias.uni-frankfurt.de> wrote:
> somebode told me, that VMD is also able to render the SDF plot. However I
> have not tested it so far.
> Good Luck,
> On 03.09.2008, at 01:28, Matt Wyczalkowski wrote:
>> I'm looking into using g_sdf for analysis. The instructions suggest
>> using gOpenMol: "The output will be a binary 3D-grid file
>> (gom_plt.dat) in the .plt format that can be be read directly by
>> However, the gOpenMol web site does not distribute Mac binaries (nor
>> source). I am using Mac OS X 10.5 (ppc).
>> Are gOpenMol Mac binaries available? Or, are there alternative
>> visualization packages which would be suitable for displaying g_sdf
>> Thanks in advance for your help.
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> Florian Dommert
> Computational and Theoretical Softmatter & Biophysics group
> Frankfurt Institute for Advanced Studies
> Johann-Wolfgang-Goethe University
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> Phone: +49(0)69 / 798 - 47522
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> EMail: dommert at fias.uni-frankfurt.de
> Home: http://fias.uni-frankfurt.de/~simbio/Florian_Dommert
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