[gmx-users] How to convert gromacs traj file(.xtc) to amber traj file?
David van der Spoel
spoel at xray.bmc.uu.se
Tue Sep 9 08:53:54 CEST 2008
Omer Markovitch wrote:
> Are you sure this will be done automaticaly if you'll procide gromacs
> with an output file called filename.trj?
> There is also the option of converting into PDB: "trjconv -f traj.xtc -o
> trajtraj.pdb -s coordinates.gro".
> omer.
try
trjconv -o blabla.g87 -f something
>
> Koby Levy research group,
> Weizmann Institute of Science.
> http://www.weizmann.ac.il/sb/faculty_pages/Levy/
>
>
> On Mon, Sep 8, 2008 at 20:14, ranqi zhu <zhuranqi at msn.com
> <mailto:zhuranqi at msn.com>> wrote:
>
> Hi, Everyone,
>
> I just want to use the clustering tool in amber which only take trj
> file.
>
> Thanks
>
> -Ranqi
>
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--
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
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