[gmx-users] How to convert gromacs traj file(.xtc) to amber traj file?

[David van der Spoel]

Omer Markovitch wrote:
> Are you sure this will be done automaticaly if you'll procide gromacs 
> with an output file called filename.trj?
> There is also the option of converting into PDB: "trjconv -f traj.xtc -o 
> trajtraj.pdb -s coordinates.gro".
> omer.

try

trjconv -o blabla.g87 -f something

> 
> Koby Levy research group,
> Weizmann Institute of Science.
> http://www.weizmann.ac.il/sb/faculty_pages/Levy/
> 
> 
> On Mon, Sep 8, 2008 at 20:14, ranqi zhu <zhuranqi at msn.com 
> <mailto:zhuranqi at msn.com>> wrote:
> 
>     Hi, Everyone,
> 
>     I just want to use the clustering tool in amber which only take trj
>     file.
> 
>     Thanks
> 
>     -Ranqi
> 
>     Want to do more with Windows Live? Learn "10 hidden secrets" from
>     Jamie. Learn Now
>     <http://windowslive.com/connect/post/jamiethomson.spaces.live.com-Blog-cns!550F681DAD532637!5295.entry?ocid=TXT_TAGLM_WL_domore_092008>
> 
>     _______________________________________________
>     gmx-users mailing list    gmx-users at gromacs.org
>     <mailto:gmx-users at gromacs.org>
>     http://www.gromacs.org/mailman/listinfo/gmx-users
>     Please search the archive at http://www.gromacs.org/search before
>     posting!
>     Please don't post (un)subscribe requests to the list. Use the
>     www interface or send it to gmx-users-request at gromacs.org
>     <mailto:gmx-users-request at gromacs.org>.
>     Can't post? Read http://www.gromacs.org/mailing_lists/users.php
> 
> 
> 
> ------------------------------------------------------------------------
> 
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php


-- 
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se