[gmx-users] system exploid during running

Morteza Khabiri khabiri at greentech.cz
Mon Sep 15 17:13:40 CEST 2008

Dear gmxuser

Thanks for your advices. Because of your help I could run my solution and
protein together.
but during the run I faced with this warning which cause the run again be
crashed, The message is:

relative constraint deviation after LINCS:
max 0.000615 (between atoms 1731 and 1732) rms 0.000023
bonds that rotated more than 30 degrees:
 atom 1 atom 2  angle  previous, current, constraint length
   1731   1732   30.7    0.1000   0.0999      0.1000

do anybody knows what should I do now?


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