[gmx-users] mdrun_mpi error Signal: Segmentation fault

[nam kim]

process crashes around 100 steps out of 1000 requested.

On Fri, Apr 10, 2009 at 4:32 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>
>
> nam kim wrote:
>>
>> I have segmentation fault error while running mdrun_mpi( gromacs 4.0.4).
>> I have installed gromacs 4.0.4 two month ago and been working fine.
>> Today, I just got Segment errors. Rebooting does not much help.
>>
>> Here is log:
>>
>> [rd:06790] *** Process received signal ***
>> [d:06790] Signal: Segmentation fault (11)
>> [rd:06790] Signal code:  (128)
>> [rd:06790] Failing at address: (nil)
>> [rd:06790] [ 0] /lib64/tls/libpthread.so.0 [0x36bc30c430]
>> [rd:06790] [ 1] /lib64/ld-linux-x86-64.so.2 [0x36bb607496]
>> [rd:06790] [ 2] /lib64/ld-linux-x86-64.so.2 [0x36bb60789e]
>> [rd:06790] [ 3] /lib64/ld-linux-x86-64.so.2 [0x36bb60a68a]
>> [rd:06790] [ 4] /lib64/ld-linux-x86-64.so.2 [0x36bb60a552]
>> [rd:06790] [ 5]
>> /usr/local/topspin/lib64/libvapi.so(vipul_cleanup+0x50) [0x2a984472b0]
>> [rd:06790] [ 6] /usr/local/topspin/lib64/libvapi.so [0x2a98440c32]
>> [rd:06790] *** End of error message ***
>>
>
> Are there any other messages from mdrun?  Anything printed to the screen
> (LINCS warnings, etc)?
>
> -Justin
>
>>
>> Thanks
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>
> --
> ========================================
>
> Justin A. Lemkul
> Graduate Research Assistant
> ICTAS Doctoral Scholar
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
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