[gmx-users] mdrun_mpi error Signal: Segmentation fault

[Justin A. Lemkul]

nam kim wrote:
> I have segmentation fault error while running mdrun_mpi( gromacs 4.0.4).
> I have installed gromacs 4.0.4 two month ago and been working fine.
> Today, I just got Segment errors. Rebooting does not much help.
> 
> Here is log:
> 
> [rd:06790] *** Process received signal ***
> [d:06790] Signal: Segmentation fault (11)
> [rd:06790] Signal code:  (128)
> [rd:06790] Failing at address: (nil)
> [rd:06790] [ 0] /lib64/tls/libpthread.so.0 [0x36bc30c430]
> [rd:06790] [ 1] /lib64/ld-linux-x86-64.so.2 [0x36bb607496]
> [rd:06790] [ 2] /lib64/ld-linux-x86-64.so.2 [0x36bb60789e]
> [rd:06790] [ 3] /lib64/ld-linux-x86-64.so.2 [0x36bb60a68a]
> [rd:06790] [ 4] /lib64/ld-linux-x86-64.so.2 [0x36bb60a552]
> [rd:06790] [ 5]
> /usr/local/topspin/lib64/libvapi.so(vipul_cleanup+0x50) [0x2a984472b0]
> [rd:06790] [ 6] /usr/local/topspin/lib64/libvapi.so [0x2a98440c32]
> [rd:06790] *** End of error message ***
> 

Are there any other messages from mdrun?  Anything printed to the screen (LINCS 
warnings, etc)?

-Justin

> 
> Thanks
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
> 

-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================